Variant report

Variant	rs546697
Chromosome Location	chr11:101039758-101039759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101038671..101041510-chr11:101044800..101047374,2	MCF-7	breast:
2	chr11:101035321..101040105-chr11:101042947..101044789,4	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10501975	0.82[EUR][1000 genomes]
rs11224627	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11224637	0.82[EUR][1000 genomes]
rs11224639	0.82[EUR][1000 genomes]
rs11224658	0.83[AFR][1000 genomes]
rs11224677	0.83[AFR][1000 genomes]
rs11224679	0.83[AFR][1000 genomes]
rs11224683	0.83[AFR][1000 genomes]
rs11224684	0.83[AFR][1000 genomes]
rs11224691	0.83[AFR][1000 genomes]
rs1145465	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11518287	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11518484	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11518485	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11602390	0.83[AFR][1000 genomes]
rs12146480	0.83[AFR][1000 genomes]
rs12361886	0.82[EUR][1000 genomes]
rs12364709	0.80[EUR][1000 genomes]
rs17737792	0.83[AFR][1000 genomes]
rs1799710	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1942843	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3740752	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740753	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121761	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4121762	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4297428	0.83[AFR][1000 genomes]
rs471715	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474320	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482765	0.81[EUR][1000 genomes]
rs487153	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495210	0.81[EUR][1000 genomes]
rs502471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505819	0.81[EUR][1000 genomes]
rs507141	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508264	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512846	0.81[EUR][1000 genomes]
rs517861	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520017	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522930	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs523081	0.80[EUR][1000 genomes]
rs525395	0.81[EUR][1000 genomes]
rs528177	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528719	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538343	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541463	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559700	0.81[EUR][1000 genomes]
rs562894	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565186	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568801	0.81[EUR][1000 genomes]
rs570245	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570885	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571923	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571925	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573932	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58128467	0.83[AFR][1000 genomes]
rs581805	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583701	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585447	0.80[EUR][1000 genomes]
rs600354	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891046	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892343	0.82[EUR][1000 genomes]
rs61892348	0.83[AFR][1000 genomes]
rs624661	0.80[EUR][1000 genomes]
rs640562	0.80[EUR][1000 genomes]
rs659048	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659331	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673943	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112806	0.83[AFR][1000 genomes]
rs7128627	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101029400-101039800	Weak transcription	Aorta	Aorta
2	chr11:101030600-101048200	Weak transcription	Fetal Lung	lung
3	chr11:101037400-101046400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
5	chr11:101038200-101050600	Weak transcription	Right Ventricle	heart
6	chr11:101039000-101040600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:101039200-101040000	Strong transcription	Ovary	ovary
8	chr11:101039400-101041000	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:101039600-101041200	Enhancers	Colon Smooth Muscle	Colon

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