Variant report

Variant	rs538343
Chromosome Location	chr11:101056339-101056340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1042838	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs1042839	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs10501975	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10895054	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs10895055	1.00[CHB][hapmap]
rs11224563	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs11224567	1.00[CHB][hapmap]
rs11224577	1.00[CHB][hapmap]
rs11224627	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11224639	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11224658	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11224677	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224678	0.82[AMR][1000 genomes]
rs11224679	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224683	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224684	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11224691	0.83[AFR][1000 genomes]
rs1145465	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs11518287	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11518483	0.90[CEU][hapmap]
rs11518484	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11518485	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11571201	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11571259	1.00[CHB][hapmap]
rs11602390	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12146480	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12361886	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12363330	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12364709	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1545611	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17737792	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1799710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1942843	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4121761	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4121762	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4297428	0.83[AFR][1000 genomes]
rs474320	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs482765	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs487153	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs502471	1.00[CHB][hapmap]
rs505819	1.00[CHB][hapmap]
rs507141	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs508264	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs517861	0.85[EUR][1000 genomes]
rs522930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs528177	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs528719	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541463	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs546697	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs548711	1.00[CHB][hapmap]
rs559700	1.00[CHB][hapmap]
rs562894	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs565186	1.00[CHB][hapmap];0.92[MEX][hapmap]
rs568801	1.00[CHB][hapmap]
rs570245	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58128467	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs581805	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs583701	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs585447	1.00[CHB][hapmap]
rs600354	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61891046	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61892343	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61892344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892348	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs659048	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs659331	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7112806	0.83[AFR][1000 genomes]
rs7128627	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9282823	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101046600-101058600	Weak transcription	Aorta	Aorta
3	chr11:101052000-101059200	Weak transcription	Ovary	ovary
4	chr11:101054800-101071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:101055400-101057000	Enhancers	Pancreatic Islets	Pancreatic Islet

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