Variant report

Variant	rs1545611
Chromosome Location	chr11:100900766-100900767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100899477..100901886-chr11:100902227..100904920,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PGR-3	chr11:100900353-100903954	NONHSAT023847

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1042838	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1042839	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10895041	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10895042	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895054	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10895055	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11224563	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11224567	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs11224572	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11224577	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11224582	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11224637	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs1145465	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11518483	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11571201	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11571259	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11600372	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12364291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237295	0.89[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3740752	0.86[AFR][1000 genomes]
rs3740753	0.86[AFR][1000 genomes]
rs471715	0.89[CEU][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs479210	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs479259	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs482765	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs495210	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs502471	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs505819	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs507141	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes]
rs509015	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs512846	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs520017	0.95[CEU][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs523081	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs523390	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs525395	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs541463	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs543955	0.83[EUR][1000 genomes]
rs548711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs559700	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs562894	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs565186	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs568801	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs570885	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs571923	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs571925	0.84[EUR][1000 genomes]
rs585447	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs586143	0.82[EUR][1000 genomes]
rs61890631	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61890632	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs624661	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs640562	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs667637	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs673943	0.95[CEU][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9282823	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100893800-100903200	Weak transcription	Aorta	Aorta
2	chr11:100899600-100903200	Weak transcription	Ovary	ovary
3	chr11:100900000-100903400	Enhancers	NHDF-Ad	bronchial
4	chr11:100900400-100905000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100900600-100900800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:100900600-100900800	Enhancers	Psoas Muscle	Psoas
7	chr11:100900600-100901000	Flanking Active TSS	NH-A	brain
8	chr11:100900600-100901200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
9	chr11:100900600-100902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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