Variant report

Variant	rs586143
Chromosome Location	chr11:100968530-100968531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100967255..100969674-chr11:100973623..100976160,3	MCF-7	breast:
2	chr11:100963209..100965255-chr11:100965604..100968767,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1042838	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1042839	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895042	0.81[EUR][1000 genomes]
rs10895054	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895055	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10895062	0.85[AFR][1000 genomes]
rs11224563	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224567	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224572	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224577	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224582	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1145465	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11518483	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11571201	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11571259	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11600372	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12280675	0.85[AFR][1000 genomes]
rs12364291	0.82[EUR][1000 genomes]
rs1545611	0.82[EUR][1000 genomes]
rs3740752	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3740753	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs471715	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs474320	0.84[AMR][1000 genomes]
rs482765	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs487153	0.84[AMR][1000 genomes]
rs495210	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs502471	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs505819	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs507141	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs508264	0.84[AMR][1000 genomes]
rs509015	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs512846	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs517861	0.80[AMR][1000 genomes]
rs520017	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs523081	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs523390	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs525395	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs528719	0.84[AMR][1000 genomes]
rs541463	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs543955	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs548711	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs559700	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs562894	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs565186	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs568801	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs570885	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs571923	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs571925	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs573932	0.84[AMR][1000 genomes]
rs583701	0.84[AMR][1000 genomes]
rs585447	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs600354	0.84[AMR][1000 genomes]
rs61890631	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61890632	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61891046	0.88[AMR][1000 genomes]
rs624661	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs640562	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs659331	0.84[AMR][1000 genomes]
rs673943	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9282823	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100959600-100971000	Weak transcription	Fetal Lung	lung
3	chr11:100962800-100970200	Weak transcription	Right Atrium	heart
4	chr11:100967400-100970600	Weak transcription	Aorta	Aorta
5	chr11:100968000-100977600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:100968400-100968800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links