Variant report

Variant	rs10895042
Chromosome Location	chr11:100885969-100885970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1042838	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1042839	0.85[EUR][1000 genomes]
rs10895041	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10895054	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10895055	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11224563	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11224567	0.87[EUR][1000 genomes]
rs11224572	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11224577	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11224582	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1145465	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11518483	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11571201	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11571259	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11600372	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12364291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237295	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1545611	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740752	0.86[AFR][1000 genomes]
rs3740753	0.86[AFR][1000 genomes]
rs471715	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs479210	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs479259	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs482765	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs495210	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs502471	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs505819	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs507141	0.86[AFR][1000 genomes]
rs509015	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs512846	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs520017	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs523081	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs523390	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs525395	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs541463	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs543955	0.81[EUR][1000 genomes]
rs548711	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs559700	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs562894	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs565186	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs568801	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs570885	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs571923	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs571925	0.83[EUR][1000 genomes]
rs585447	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs586143	0.81[EUR][1000 genomes]
rs61890631	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61890632	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs624661	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs640562	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs667637	0.89[EUR][1000 genomes]
rs673943	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9282823	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1036546	chr11:100869056-100893542	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100882200-100887400	Weak transcription	Ovary	ovary
2	chr11:100885600-100886000	Enhancers	K562	blood
3	chr11:100885600-100886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links