Variant report

Variant	rs667637
Chromosome Location	chr11:100874697-100874698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100873653..100876107-chr11:100997694..101000599,2	MCF-7	breast:
2	chr11:100850533..100851521-chr11:100874106..100874843,2	MCF-7	breast:
3	chr11:100848053..100849856-chr11:100874640..100877609,2	K562	blood:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1042838	0.84[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs1042839	0.81[GIH][hapmap]
rs10895042	0.89[EUR][1000 genomes]
rs10895054	0.93[CEU][hapmap]
rs10895055	0.84[CEU][hapmap]
rs11224563	0.84[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs11224567	0.84[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs1145465	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs11518483	0.90[CEU][hapmap]
rs11571201	0.84[CEU][hapmap]
rs11571259	0.84[CEU][hapmap]
rs12364291	0.87[EUR][1000 genomes]
rs1237295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545611	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs476308	0.82[AFR][1000 genomes]
rs479210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479259	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482765	0.83[CEU][hapmap]
rs489397	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs493038	0.82[AFR][1000 genomes]
rs495029	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs502471	0.84[CEU][hapmap]
rs505819	0.84[CEU][hapmap]
rs511298	0.91[GIH][hapmap]
rs516895	0.88[ASW][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs520017	0.84[CEU][hapmap]
rs523332	0.82[ASW][hapmap]
rs541463	0.84[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs548711	0.84[CEU][hapmap]
rs559700	0.84[CEU][hapmap]
rs562894	0.83[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap]
rs565186	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs568801	0.84[CEU][hapmap]
rs585447	0.84[CEU][hapmap]
rs61890567	0.82[ASN][1000 genomes]
rs673943	0.84[CEU][hapmap]
rs9282823	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv522843	chr11:100868961-100878498	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1036546	chr11:100869056-100893542	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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