Variant report

Variant	rs61891046
Chromosome Location	chr11:101008573-101008574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1042838	0.87[AMR][1000 genomes]
rs1042839	0.81[AMR][1000 genomes]
rs10501975	0.81[EUR][1000 genomes]
rs10895054	0.81[AMR][1000 genomes]
rs10895055	0.81[AMR][1000 genomes]
rs11224563	0.81[AMR][1000 genomes]
rs11224567	0.81[AMR][1000 genomes]
rs11224572	0.81[AMR][1000 genomes]
rs11224577	0.87[AMR][1000 genomes]
rs11224582	0.90[AMR][1000 genomes]
rs11224627	0.82[EUR][1000 genomes]
rs11224637	0.81[EUR][1000 genomes]
rs11224639	0.81[EUR][1000 genomes]
rs1145465	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11518287	0.81[EUR][1000 genomes]
rs11518483	0.90[AMR][1000 genomes]
rs11518484	0.81[EUR][1000 genomes]
rs11518485	0.81[EUR][1000 genomes]
rs11571201	0.90[AMR][1000 genomes]
rs11571259	0.81[AMR][1000 genomes]
rs11600372	0.90[AMR][1000 genomes]
rs12361886	0.81[EUR][1000 genomes]
rs1799710	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1942843	0.82[EUR][1000 genomes]
rs3740752	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740753	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121761	0.81[EUR][1000 genomes]
rs4121762	0.81[EUR][1000 genomes]
rs471715	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474320	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482765	0.90[AMR][1000 genomes]
rs487153	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495210	0.90[AMR][1000 genomes]
rs502471	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505819	0.90[AMR][1000 genomes]
rs507141	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508264	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509015	0.88[AMR][1000 genomes]
rs512846	0.90[AMR][1000 genomes]
rs517861	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520017	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs522930	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs523081	0.90[AMR][1000 genomes]
rs523390	0.88[AMR][1000 genomes]
rs525395	0.90[AMR][1000 genomes]
rs528177	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528719	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538343	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs541463	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs543955	0.88[AMR][1000 genomes]
rs546697	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548711	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559700	0.90[AMR][1000 genomes]
rs562894	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565186	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs568801	0.90[AMR][1000 genomes]
rs570245	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570885	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571923	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571925	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573932	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581805	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583701	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585447	0.90[AMR][1000 genomes]
rs586143	0.88[AMR][1000 genomes]
rs600354	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890631	0.81[AMR][1000 genomes]
rs61890632	0.81[AMR][1000 genomes]
rs61892343	0.81[EUR][1000 genomes]
rs624661	0.90[AMR][1000 genomes]
rs640562	0.86[AMR][1000 genomes]
rs659048	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659331	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673943	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9282823	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898328	chr11:100993846-101009933	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101000600-101011000	Weak transcription	Aorta	Aorta
2	chr11:101000800-101023000	Weak transcription	Ovary	ovary
3	chr11:101001600-101023200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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