Variant report

Variant	rs11224640
Chromosome Location	chr11:101093933-101093934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11224609	1.00[AMR][1000 genomes]
rs11224613	1.00[AMR][1000 genomes]
rs11224614	1.00[AMR][1000 genomes]
rs11224619	1.00[AMR][1000 genomes]
rs11224625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272248	1.00[AMR][1000 genomes]
rs12274288	1.00[AMR][1000 genomes]
rs12284481	1.00[AMR][1000 genomes]
rs12286895	1.00[AMR][1000 genomes]
rs12291802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293922	1.00[AMR][1000 genomes]
rs6590840	1.00[AMR][1000 genomes]
rs7108324	1.00[AMR][1000 genomes]
rs7358517	1.00[AMR][1000 genomes]
rs7952140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary
2	chr11:101092400-101102000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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