Variant report

Variant	rs12286895
Chromosome Location	chr11:101030619-101030620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11224609	1.00[AMR][1000 genomes]
rs11224613	1.00[AMR][1000 genomes]
rs11224614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11224619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11224625	1.00[AMR][1000 genomes]
rs11224640	1.00[AMR][1000 genomes]
rs12272248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291802	1.00[AMR][1000 genomes]
rs12293922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358517	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101026400-101035800	Weak transcription	Right Ventricle	heart
2	chr11:101028400-101031400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr11:101029400-101036000	Weak transcription	Left Ventricle	heart
4	chr11:101029400-101039800	Weak transcription	Aorta	Aorta
5	chr11:101029600-101036000	Weak transcription	Ovary	ovary
6	chr11:101030600-101031000	Weak transcription	Adipose Nuclei	Adipose
7	chr11:101030600-101048200	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links