Variant report

Variant	rs11224816
Chromosome Location	chr11:101396286-101396287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10501980	0.82[TSI][hapmap]
rs10501981	0.82[EUR][1000 genomes]
rs10501986	0.82[MKK][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs10750606	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10791477	0.81[YRI][hapmap]
rs10791478	0.80[LWK][hapmap]
rs10791479	0.81[CEU][hapmap]
rs10791485	0.82[TSI][hapmap]
rs10791488	0.81[EUR][1000 genomes]
rs10791489	0.81[EUR][1000 genomes]
rs10791490	0.86[MKK][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs10791491	0.82[EUR][1000 genomes]
rs10791492	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10791493	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10791494	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10895121	0.86[LWK][hapmap];0.84[MKK][hapmap]
rs10895125	0.82[TSI][hapmap]
rs10895126	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10895127	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10895128	0.84[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10895129	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895130	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224790	0.82[CEU][hapmap]
rs11224791	0.82[TSI][hapmap]
rs11224792	0.82[TSI][hapmap]
rs11224800	0.81[CEU][hapmap]
rs11826165	0.83[LWK][hapmap];0.85[MKK][hapmap]
rs4129255	0.87[LWK][hapmap];0.86[MKK][hapmap]
rs4262694	0.82[EUR][1000 genomes]
rs4275596	0.81[JPT][hapmap]
rs4285844	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4331056	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4403777	0.87[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap]
rs4477408	0.82[EUR][1000 genomes]
rs4533005	0.82[EUR][1000 genomes]
rs4542378	0.82[EUR][1000 genomes]
rs4578354	0.82[EUR][1000 genomes]
rs4619120	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6590868	0.81[AFR][1000 genomes]
rs6590870	0.82[TSI][hapmap]
rs6590872	0.80[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590873	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590874	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590875	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590876	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590877	0.80[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6590878	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6590879	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7104033	0.82[EUR][1000 genomes]
rs7105161	0.82[EUR][1000 genomes]
rs7109127	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7113034	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7115999	1.00[CEU][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7116473	1.00[CEU][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7116629	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123199	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7127243	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7128289	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7924551	0.87[LWK][hapmap];0.85[MKK][hapmap]
rs7925012	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7927661	0.82[EUR][1000 genomes]
rs7927674	0.82[EUR][1000 genomes]
rs7927797	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7927803	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7927852	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7927859	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7930876	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7931830	0.86[LWK][hapmap];0.83[MKK][hapmap]
rs7932871	0.82[MKK][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs7933359	0.80[EUR][1000 genomes]
rs7934021	0.84[LWK][hapmap];0.83[MKK][hapmap]
rs7934116	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7934208	0.82[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs7934219	0.80[EUR][1000 genomes]
rs7934774	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7935702	0.83[EUR][1000 genomes]
rs7937745	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7938806	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952474	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11224816	MMP7	cis	lymphoblastoid	seeQTL
rs11224816	DYNC2H1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101387600-101400800	Weak transcription	Ovary	ovary
2	chr11:101392400-101402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101393600-101396600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:101394600-101398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:101395000-101398200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:101395800-101396800	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:101395800-101396800	Enhancers	Fetal Intestine Large	intestine

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