Variant report

Variant	rs7123199
Chromosome Location	chr11:101388358-101388359
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10501980	0.91[CHB][hapmap];0.85[YRI][hapmap]
rs10501981	0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs10501986	0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs10750606	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791477	0.82[CHB][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap]
rs10791478	0.82[CHB][hapmap];0.93[YRI][hapmap]
rs10791479	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs10791481	0.90[CHB][hapmap]
rs10791485	0.91[CHB][hapmap];0.85[YRI][hapmap]
rs10791486	0.83[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap]
rs10791487	0.91[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap]
rs10791488	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10791489	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10791490	0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10791491	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10791492	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791493	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791494	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895118	0.82[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap]
rs10895119	0.89[YRI][hapmap]
rs10895121	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs10895122	0.82[CHB][hapmap]
rs10895123	0.83[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap]
rs10895124	0.91[CHB][hapmap];0.81[YRI][hapmap]
rs10895125	0.91[CHB][hapmap];0.85[YRI][hapmap]
rs10895126	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895128	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895129	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895130	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11224784	0.85[YRI][hapmap]
rs11224785	0.93[YRI][hapmap]
rs11224790	0.89[CHB][hapmap]
rs11224791	0.91[CHB][hapmap];0.85[YRI][hapmap]
rs11224792	0.91[CHB][hapmap];0.85[YRI][hapmap]
rs11224800	0.91[CHB][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes]
rs11224801	0.91[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap]
rs11224802	0.91[CHB][hapmap]
rs11224806	0.91[CHB][hapmap]
rs11224816	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224817	0.97[ASN][1000 genomes]
rs11821584	0.93[YRI][hapmap]
rs11826165	0.89[YRI][hapmap]
rs12270234	0.89[YRI][hapmap]
rs12361641	0.85[YRI][hapmap]
rs12787386	0.86[YRI][hapmap]
rs12789670	0.89[YRI][hapmap]
rs17674687	0.91[CHB][hapmap]
rs17741661	0.83[CHB][hapmap]
rs17742220	0.91[CHB][hapmap]
rs4129253	0.82[CHB][hapmap]
rs4129254	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs4129255	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs4262694	0.91[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs4272759	0.91[CHB][hapmap]
rs4275596	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs4285844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403777	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs4477408	0.91[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs4481994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4533005	0.83[EUR][1000 genomes]
rs4542378	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs4578354	0.83[EUR][1000 genomes]
rs4619120	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590866	0.90[YRI][hapmap]
rs6590868	0.84[AFR][1000 genomes]
rs6590869	0.80[EUR][1000 genomes]
rs6590870	0.91[CHB][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes]
rs6590872	0.83[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6590873	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6590874	0.91[CHB][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6590875	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6590876	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6590877	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6590878	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6590879	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104033	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7105161	0.83[EUR][1000 genomes]
rs7109127	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113034	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116473	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116629	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7128289	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924434	0.93[YRI][hapmap]
rs7924551	0.89[YRI][hapmap]
rs7925012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927661	0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7927664	0.90[YRI][hapmap]
rs7927674	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7927797	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927803	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927852	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7930876	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7931830	0.89[YRI][hapmap]
rs7932073	0.86[YRI][hapmap]
rs7932871	0.91[CHB][hapmap];0.84[EUR][1000 genomes]
rs7933359	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7934021	0.92[YRI][hapmap]
rs7934116	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7934208	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7934219	0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7934774	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935702	0.91[CHB][hapmap];0.84[EUR][1000 genomes]
rs7937745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938416	0.93[YRI][hapmap]
rs7938806	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952474	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101376200-101391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101384800-101388400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:101387600-101400800	Weak transcription	Ovary	ovary
4	chr11:101387800-101388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:101387800-101391200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:101387800-101391600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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