Variant report

Variant	rs17674687
Chromosome Location	chr11:101388527-101388528
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10501979	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10501980	1.00[CHB][hapmap]
rs10501981	1.00[CHB][hapmap]
rs10501986	1.00[CHB][hapmap]
rs10750606	0.91[CHB][hapmap]
rs10791477	0.91[CHB][hapmap]
rs10791478	0.90[CHB][hapmap]
rs10791479	1.00[CHB][hapmap]
rs10791481	1.00[CHB][hapmap]
rs10791485	1.00[CHB][hapmap]
rs10791486	0.91[CHB][hapmap]
rs10791487	1.00[CHB][hapmap]
rs10791490	1.00[CHB][hapmap]
rs10895118	0.91[CHB][hapmap]
rs10895119	0.82[CHB][hapmap]
rs10895121	0.90[CHB][hapmap]
rs10895122	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10895123	0.91[CHB][hapmap]
rs10895124	1.00[CHB][hapmap]
rs10895125	1.00[CHB][hapmap]
rs10895126	0.91[CHB][hapmap]
rs10895127	0.91[CHB][hapmap]
rs10895128	0.90[CHB][hapmap]
rs11224790	1.00[CHB][hapmap]
rs11224791	1.00[CHB][hapmap]
rs11224792	1.00[CHB][hapmap]
rs11224800	1.00[CHB][hapmap]
rs11224801	1.00[CHB][hapmap]
rs11224802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224807	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11224808	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17741661	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17742220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129253	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4129254	0.91[CHB][hapmap]
rs4129255	0.90[CHB][hapmap]
rs4262694	1.00[CHB][hapmap]
rs4272759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4275596	0.91[CHB][hapmap]
rs4285844	0.91[CHB][hapmap]
rs4331056	0.91[CHB][hapmap]
rs4403777	0.90[CHB][hapmap]
rs4477408	1.00[CHB][hapmap]
rs4481994	0.91[CHB][hapmap]
rs4492783	0.99[ASN][1000 genomes]
rs4542378	1.00[CHB][hapmap]
rs6590870	1.00[CHB][hapmap]
rs6590872	0.82[CHB][hapmap]
rs6590874	1.00[CHB][hapmap]
rs6590877	1.00[CHB][hapmap]
rs7115999	0.91[CHB][hapmap]
rs7116473	0.91[CHB][hapmap]
rs7123199	0.91[CHB][hapmap]
rs7127243	0.91[CHB][hapmap]
rs7925012	0.91[CHB][hapmap]
rs7927661	1.00[CHB][hapmap]
rs7927852	0.91[CHB][hapmap]
rs7927859	0.91[CHB][hapmap]
rs7932871	1.00[CHB][hapmap]
rs7934116	0.90[CHB][hapmap]
rs7934208	1.00[CHB][hapmap]
rs7934219	1.00[CHB][hapmap]
rs7935702	1.00[CHB][hapmap]
rs7937329	1.00[YRI][hapmap]
rs7937745	0.91[CHB][hapmap]
rs7952182	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101376200-101391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101387600-101400800	Weak transcription	Ovary	ovary
3	chr11:101387800-101388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:101387800-101391200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:101387800-101391600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links