Variant report

Variant	rs4129253
Chromosome Location	chr11:101365157-101365158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10501979	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501980	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs10501981	0.90[CHB][hapmap]
rs10501986	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs10750606	0.82[CHB][hapmap]
rs10791477	1.00[CHB][hapmap]
rs10791478	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10791479	0.90[CHB][hapmap]
rs10791481	0.90[CHB][hapmap]
rs10791485	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs10791486	0.82[CHB][hapmap]
rs10791487	0.90[CHB][hapmap]
rs10791490	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs10895118	1.00[CHB][hapmap]
rs10895119	1.00[CHB][hapmap]
rs10895121	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs10895122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895123	0.82[CHB][hapmap]
rs10895124	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs10895125	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs10895126	0.82[CHB][hapmap]
rs10895127	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs10895128	0.81[CHB][hapmap]
rs11224790	0.88[CHB][hapmap]
rs11224791	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs11224792	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs11224800	0.90[CHB][hapmap]
rs11224801	0.90[CHB][hapmap]
rs11224802	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224806	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224807	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11224808	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12283329	0.81[ASW][hapmap]
rs17096869	0.81[ASW][hapmap]
rs17674687	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17741661	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17742220	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4129254	1.00[CHB][hapmap]
rs4129255	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4262694	0.90[CHB][hapmap]
rs4272759	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4275596	0.82[CHB][hapmap]
rs4285844	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs4331056	0.82[CHB][hapmap]
rs4403777	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4477408	0.90[CHB][hapmap]
rs4481994	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs4492783	0.84[ASN][1000 genomes]
rs4542378	0.88[CHB][hapmap]
rs6590870	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs6590872	0.82[CHB][hapmap]
rs6590874	0.90[CHB][hapmap]
rs6590877	1.00[CHB][hapmap]
rs7115999	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs7116473	0.81[CHB][hapmap]
rs7123199	0.82[CHB][hapmap]
rs7127243	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs7925012	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs7927661	0.90[CHB][hapmap]
rs7927852	0.82[CHB][hapmap]
rs7927859	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs7932871	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs7934116	0.81[CHB][hapmap]
rs7934208	0.90[CHB][hapmap];0.96[CHD][hapmap]
rs7934219	0.90[CHB][hapmap]
rs7935702	0.90[CHB][hapmap]
rs7937745	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv976474	chr11:101364853-101369234	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101337800-101368200	Weak transcription	Ovary	ovary
2	chr11:101350000-101384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:101359000-101372200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101360000-101369000	Weak transcription	NHDF-Ad	bronchial
5	chr11:101362400-101373400	Weak transcription	Fetal Lung	lung
6	chr11:101363400-101369600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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