Variant report

Variant	rs11224806
Chromosome Location	chr11:101377832-101377833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10501979	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10501980	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10501981	1.00[CHB][hapmap]
rs10501986	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10750606	0.91[CHB][hapmap]
rs10791477	0.90[CHB][hapmap]
rs10791478	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs10791479	1.00[CHB][hapmap]
rs10791481	1.00[CHB][hapmap]
rs10791485	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs10791486	0.91[CHB][hapmap]
rs10791487	1.00[CHB][hapmap]
rs10791490	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10895118	0.90[CHB][hapmap]
rs10895119	0.82[CHB][hapmap]
rs10895121	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs10895122	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895123	0.91[CHB][hapmap]
rs10895124	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs10895125	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs10895126	0.91[CHB][hapmap]
rs10895127	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs10895128	0.90[CHB][hapmap]
rs11224790	1.00[CHB][hapmap]
rs11224791	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11224792	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11224800	1.00[CHB][hapmap]
rs11224801	1.00[CHB][hapmap]
rs11224802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];0.83[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224807	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11224808	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17674687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17741661	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17742220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4129253	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4129254	0.90[CHB][hapmap]
rs4129255	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs4262694	1.00[CHB][hapmap]
rs4272759	1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4275596	0.91[CHB][hapmap]
rs4285844	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs4331056	0.91[CHB][hapmap]
rs4403777	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs4477408	1.00[CHB][hapmap]
rs4481994	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs4492783	0.92[ASN][1000 genomes]
rs4542378	1.00[CHB][hapmap]
rs6590870	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6590872	0.82[CHB][hapmap]
rs6590874	1.00[CHB][hapmap]
rs6590877	1.00[CHB][hapmap]
rs7115999	0.91[CHB][hapmap];0.95[CHD][hapmap]
rs7116473	0.90[CHB][hapmap]
rs7123199	0.91[CHB][hapmap]
rs7127243	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7925012	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7927661	1.00[CHB][hapmap]
rs7927852	0.91[CHB][hapmap]
rs7927859	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7932871	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7934116	0.90[CHB][hapmap]
rs7934208	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs7934219	1.00[CHB][hapmap]
rs7935702	1.00[CHB][hapmap]
rs7937745	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2762940	chr11:101376692-101382025	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3465319	chr11:101376833-101383807	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3465330	chr11:101376851-101383813	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv982956	chr11:101376879-101384387	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3465308	chr11:101376895-101383766	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3465341	chr11:101376895-101383766	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101350000-101384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101375200-101387400	Weak transcription	Ovary	ovary
3	chr11:101375400-101378000	Weak transcription	Fetal Lung	lung
4	chr11:101376200-101391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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