Variant report
Variant | rs4481994 |
---|---|
Chromosome Location | chr11:101395310-101395311 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10501980 | 0.91[CHB][hapmap];0.88[CHD][hapmap] |
rs10501981 | 0.91[CHB][hapmap] |
rs10501986 | 0.91[CHB][hapmap];0.88[CHD][hapmap] |
rs10750606 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes] |
rs10791477 | 0.82[CHB][hapmap] |
rs10791478 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
rs10791479 | 0.91[CHB][hapmap] |
rs10791481 | 0.90[CHB][hapmap] |
rs10791485 | 0.91[CHB][hapmap];0.84[CHD][hapmap] |
rs10791486 | 0.82[CHB][hapmap] |
rs10791487 | 0.91[CHB][hapmap] |
rs10791490 | 0.91[CHB][hapmap];0.88[CHD][hapmap] |
rs10791492 | 0.94[ASN][1000 genomes] |
rs10791493 | 0.94[ASN][1000 genomes] |
rs10791494 | 0.98[ASN][1000 genomes] |
rs10895118 | 0.82[CHB][hapmap] |
rs10895121 | 0.82[CHB][hapmap] |
rs10895122 | 0.82[CHB][hapmap] |
rs10895123 | 0.82[CHB][hapmap] |
rs10895124 | 0.91[CHB][hapmap];0.85[CHD][hapmap] |
rs10895125 | 0.91[CHB][hapmap];0.83[CHD][hapmap] |
rs10895126 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs10895127 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs10895128 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes] |
rs10895129 | 0.94[ASN][1000 genomes] |
rs10895130 | 0.84[CHB][hapmap];0.81[JPT][hapmap] |
rs11224790 | 0.89[CHB][hapmap] |
rs11224791 | 0.91[CHB][hapmap];0.88[CHD][hapmap] |
rs11224792 | 0.91[CHB][hapmap];0.87[CHD][hapmap] |
rs11224800 | 0.91[CHB][hapmap] |
rs11224801 | 0.91[CHB][hapmap] |
rs11224802 | 0.91[CHB][hapmap];0.88[CHD][hapmap] |
rs11224806 | 0.91[CHB][hapmap];0.86[CHD][hapmap] |
rs11224817 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17674687 | 0.91[CHB][hapmap] |
rs17741661 | 0.82[CHB][hapmap] |
rs17742220 | 0.91[CHB][hapmap] |
rs4129253 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
rs4129254 | 0.82[CHB][hapmap] |
rs4129255 | 0.82[CHB][hapmap];0.87[CHD][hapmap] |
rs4262694 | 0.91[CHB][hapmap] |
rs4272759 | 0.91[CHB][hapmap];0.92[CHD][hapmap] |
rs4275596 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4285844 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs4331056 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs4403777 | 0.82[CHB][hapmap];0.88[CHD][hapmap] |
rs4477408 | 0.91[CHB][hapmap] |
rs4542378 | 0.89[CHB][hapmap] |
rs4619120 | 0.97[ASN][1000 genomes] |
rs6590870 | 0.91[CHB][hapmap];0.87[CHD][hapmap] |
rs6590872 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
rs6590873 | 0.80[ASN][1000 genomes] |
rs6590874 | 0.91[CHB][hapmap];0.80[ASN][1000 genomes] |
rs6590875 | 0.81[ASN][1000 genomes] |
rs6590876 | 0.82[ASN][1000 genomes] |
rs6590877 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
rs6590878 | 0.98[ASN][1000 genomes] |
rs6590879 | 0.98[ASN][1000 genomes] |
rs7109127 | 0.94[ASN][1000 genomes] |
rs7113034 | 0.97[ASN][1000 genomes] |
rs7115999 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7116473 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs7116629 | 0.97[ASN][1000 genomes] |
rs7123199 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs7127243 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs7128289 | 0.97[ASN][1000 genomes] |
rs7925012 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7927661 | 0.91[CHB][hapmap] |
rs7927797 | 0.80[ASN][1000 genomes] |
rs7927803 | 0.80[ASN][1000 genomes] |
rs7927852 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs7927859 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
rs7930876 | 0.84[ASN][1000 genomes] |
rs7932871 | 0.91[CHB][hapmap];0.87[CHD][hapmap] |
rs7934116 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7934208 | 0.91[CHB][hapmap];0.84[CHD][hapmap] |
rs7934219 | 0.90[CHB][hapmap] |
rs7934774 | 0.98[ASN][1000 genomes] |
rs7935702 | 0.91[CHB][hapmap] |
rs7937745 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7938806 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv556131 | chr11:100985777-101480017 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv530644 | chr11:101010088-101486038 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv898330 | chr11:101243644-101722031 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:101387600-101400800 | Weak transcription | Ovary | ovary |
2 | chr11:101392400-101402600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
3 | chr11:101393600-101395400 | Enhancers | HUES48 Cell Line | embryonic stem cell |
4 | chr11:101393600-101395800 | Weak transcription | Fetal Intestine Large | intestine |
5 | chr11:101393600-101396600 | Weak transcription | Fetal Intestine Small | intestine |
6 | chr11:101394200-101395800 | Weak transcription | Primary B cells from peripheral blood | blood |
7 | chr11:101394600-101398400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
8 | chr11:101395000-101398200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |