Variant report

Variant	rs4492783
Chromosome Location	chr11:101395253-101395254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10501979	0.84[ASN][1000 genomes]
rs10895122	0.84[ASN][1000 genomes]
rs11224802	0.85[ASN][1000 genomes]
rs11224806	0.92[ASN][1000 genomes]
rs11224807	0.89[ASN][1000 genomes]
rs11224808	0.92[ASN][1000 genomes]
rs11224817	0.85[AFR][1000 genomes]
rs17674687	0.99[ASN][1000 genomes]
rs17741661	0.85[ASN][1000 genomes]
rs17742220	0.99[ASN][1000 genomes]
rs4129253	0.84[ASN][1000 genomes]
rs4272759	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101387600-101400800	Weak transcription	Ovary	ovary
2	chr11:101392400-101402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101393600-101395400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:101393600-101395800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:101393600-101396600	Weak transcription	Fetal Intestine Small	intestine
6	chr11:101394200-101395800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:101394600-101398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:101395000-101398200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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