Variant report

Variant	rs11225158
Chromosome Location	chr11:102060572-102060573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102050791..102052559-chr11:102058384..102060763,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501994	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10501995	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225154	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11225159	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225161	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225166	0.87[CEU][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes]
rs11225168	0.87[CEU][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes]
rs1365326	0.83[EUR][1000 genomes]
rs1894116	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28438856	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73582040	0.87[AFR][1000 genomes]
rs73582055	0.96[AFR][1000 genomes]
rs7925543	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102028000-102062800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:102029200-102067600	Weak transcription	HSMMtube	muscle
3	chr11:102033400-102061000	Weak transcription	Right Ventricle	heart
4	chr11:102034600-102076800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:102036000-102069400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:102041600-102062400	Weak transcription	Left Ventricle	heart
7	chr11:102043800-102077000	Weak transcription	Esophagus	oesophagus
8	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
9	chr11:102046800-102076600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:102048200-102062400	Weak transcription	Liver	Liver
11	chr11:102048400-102065200	Weak transcription	Aorta	Aorta
12	chr11:102048400-102073600	Weak transcription	Psoas Muscle	Psoas
13	chr11:102048400-102077200	Weak transcription	Lung	lung
14	chr11:102050200-102061600	Weak transcription	Small Intestine	intestine
15	chr11:102050400-102076600	Weak transcription	Placenta	Placenta
16	chr11:102051400-102076600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:102052000-102062400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:102052000-102076600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:102056000-102063200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:102056000-102078400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:102056200-102074800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:102057200-102066800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:102057400-102061200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:102057600-102061200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:102057800-102063400	Weak transcription	HMEC	breast
26	chr11:102057800-102065600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:102058000-102066000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:102058200-102062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:102058200-102062400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:102058200-102063000	Weak transcription	NHEK	skin
31	chr11:102058200-102063200	Weak transcription	HSMM	muscle
32	chr11:102058200-102065600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:102058200-102066000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:102058200-102066000	Weak transcription	Hela-S3	cervix
35	chr11:102058200-102067000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:102058200-102076800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:102058400-102061000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:102058600-102065000	Weak transcription	NH-A	brain
39	chr11:102058600-102068200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:102058800-102061600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:102058800-102062400	Enhancers	HepG2	liver
42	chr11:102058800-102062600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:102058800-102063600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:102058800-102065600	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:102058800-102067200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:102059000-102060800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:102059000-102063400	Weak transcription	Osteobl	bone
48	chr11:102059200-102062800	Weak transcription	NHLF	lung
49	chr11:102059200-102067600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:102059400-102062000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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