Variant report

Variant	rs7925543
Chromosome Location	chr11:102081877-102081878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102077373..102079274-chr11:102080576..102082844,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501995	0.91[EUR][1000 genomes]
rs11225154	0.80[EUR][1000 genomes]
rs11225158	0.91[EUR][1000 genomes]
rs11225159	0.91[EUR][1000 genomes]
rs11225161	0.91[EUR][1000 genomes]
rs11225166	0.82[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225168	0.82[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365326	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1378335	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1894116	0.91[EUR][1000 genomes]
rs2604529	0.81[EUR][1000 genomes]
rs73583916	0.96[AFR][1000 genomes]
rs73585832	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
2	chr11:102059600-102100400	Weak transcription	Gastric	stomach
3	chr11:102062800-102096400	Weak transcription	Small Intestine	intestine
4	chr11:102063800-102096600	Weak transcription	Stomach Mucosa	stomach
5	chr11:102064000-102094400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:102069000-102088400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:102071400-102094400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:102073400-102084200	Strong transcription	Fetal Lung	lung
10	chr11:102074000-102097000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:102074000-102104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:102075200-102091400	Weak transcription	Aorta	Aorta
13	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:102075600-102085000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:102075600-102085000	Weak transcription	Fetal Heart	heart
16	chr11:102076200-102084600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:102076200-102085200	Strong transcription	HSMM	muscle
18	chr11:102076200-102091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:102076200-102102200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:102076400-102083200	Strong transcription	Hela-S3	cervix
21	chr11:102076400-102083800	Strong transcription	HepG2	liver
22	chr11:102076400-102086600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:102076600-102083400	Strong transcription	HMEC	breast
24	chr11:102076600-102083600	Strong transcription	Liver	Liver
25	chr11:102076600-102083800	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr11:102076600-102084400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:102076600-102084600	Strong transcription	Placenta	Placenta
28	chr11:102076600-102084800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:102076600-102084800	Strong transcription	Fetal Stomach	stomach
30	chr11:102076600-102085200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:102076600-102086600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:102076600-102090200	Strong transcription	Osteobl	bone
33	chr11:102076600-102093400	Strong transcription	Fetal Intestine Large	intestine
34	chr11:102076800-102085000	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr11:102076800-102089200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:102077000-102097400	Weak transcription	Psoas Muscle	Psoas
37	chr11:102077200-102085400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:102077200-102093200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:102077600-102084000	Weak transcription	Lung	lung
40	chr11:102077600-102086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:102077600-102094400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:102077600-102096600	Weak transcription	Esophagus	oesophagus
43	chr11:102077600-102096600	Weak transcription	Right Ventricle	heart
44	chr11:102078800-102091200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:102078800-102096600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:102078800-102105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:102079000-102088400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:102079000-102094400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:102079000-102107200	Weak transcription	Fetal Brain Male	brain
50	chr11:102079200-102084800	Weak transcription	A549	lung

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