Variant report

Variant	rs73585832
Chromosome Location	chr11:102100199-102100200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17097551	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56876144	1.00[ASN][1000 genomes]
rs57630982	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58397810	1.00[AMR][1000 genomes]
rs59859727	1.00[ASN][1000 genomes]
rs60269946	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131529	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73582043	1.00[AMR][1000 genomes]
rs73582094	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73582098	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73582101	1.00[ASN][1000 genomes]
rs73583916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73585838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585847	1.00[AMR][1000 genomes]
rs73585870	1.00[ASN][1000 genomes]
rs7925543	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
2	chr11:102059600-102100400	Weak transcription	Gastric	stomach
3	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:102074000-102104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:102076200-102102200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:102078800-102105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:102079000-102107200	Weak transcription	Fetal Brain Male	brain
9	chr11:102081200-102118600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:102086800-102111600	Weak transcription	Lung	lung
11	chr11:102088600-102105200	Weak transcription	Brain Substantia Nigra	brain
12	chr11:102091800-102102800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:102093000-102113000	Weak transcription	Ovary	ovary
14	chr11:102094200-102101200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:102094400-102101800	Strong transcription	Liver	Liver
16	chr11:102094400-102102000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:102095200-102105400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:102095200-102118600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:102095800-102101000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr11:102095800-102101200	Genic enhancers	HepG2	liver
21	chr11:102096400-102101000	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:102096800-102114600	Weak transcription	Small Intestine	intestine
23	chr11:102097000-102100400	Weak transcription	Esophagus	oesophagus
24	chr11:102097000-102102000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:102097000-102105800	Weak transcription	Right Ventricle	heart
26	chr11:102097200-102100400	Strong transcription	Placenta	Placenta
27	chr11:102097200-102105800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:102097400-102105400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:102097600-102105200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:102097800-102100400	Weak transcription	A549	lung
31	chr11:102097800-102100600	Weak transcription	Stomach Mucosa	stomach
32	chr11:102097800-102102600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:102097800-102119600	Weak transcription	Right Atrium	heart
34	chr11:102098000-102100200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:102098000-102100400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:102098000-102101200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:102098000-102111600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:102098200-102100800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:102098200-102101000	Strong transcription	NHLF	lung
40	chr11:102098200-102101200	Genic enhancers	NHEK	skin
41	chr11:102098400-102100400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:102098400-102101200	Strong transcription	NHDF-Ad	bronchial
43	chr11:102098400-102101400	Weak transcription	HUVEC	blood vessel
44	chr11:102098400-102101600	Strong transcription	Osteobl	bone
45	chr11:102098400-102101800	Strong transcription	NH-A	brain
46	chr11:102098400-102102000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:102098400-102102400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:102098400-102105000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:102098400-102105800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:102098400-102106600	Strong transcription	HSMM	muscle

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