Variant report

Variant	rs73585841
Chromosome Location	chr11:102105522-102105523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:102105376-102106591	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:102105350-102107540	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102105024..102105732-chr3:111632640..111633407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254422	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17097551	1.00[AMR][1000 genomes]
rs57630982	1.00[AMR][1000 genomes]
rs58397810	1.00[AMR][1000 genomes]
rs60269946	1.00[AMR][1000 genomes]
rs7131529	1.00[AMR][1000 genomes]
rs73582043	1.00[AMR][1000 genomes]
rs73582094	1.00[AMR][1000 genomes]
rs73582098	1.00[AMR][1000 genomes]
rs73583916	1.00[AMR][1000 genomes]
rs73585832	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:102078800-102105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:102079000-102107200	Weak transcription	Fetal Brain Male	brain
4	chr11:102081200-102118600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:102086800-102111600	Weak transcription	Lung	lung
6	chr11:102093000-102113000	Weak transcription	Ovary	ovary
7	chr11:102095200-102118600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:102096800-102114600	Weak transcription	Small Intestine	intestine
9	chr11:102097000-102105800	Weak transcription	Right Ventricle	heart
10	chr11:102097200-102105800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:102097800-102119600	Weak transcription	Right Atrium	heart
12	chr11:102098000-102111600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:102098400-102105800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:102098400-102106600	Strong transcription	HSMM	muscle
15	chr11:102098400-102118600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:102098600-102105800	Weak transcription	Psoas Muscle	Psoas
17	chr11:102099000-102112800	Weak transcription	Hela-S3	cervix
18	chr11:102100800-102105600	Weak transcription	Aorta	Aorta
19	chr11:102100800-102105600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:102100800-102109000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:102100800-102111400	Weak transcription	A549	lung
22	chr11:102100800-102112800	Weak transcription	Fetal Heart	heart
23	chr11:102100800-102113000	Weak transcription	Esophagus	oesophagus
24	chr11:102101000-102107800	Weak transcription	Fetal Kidney	kidney
25	chr11:102101000-102111200	Weak transcription	NHLF	lung
26	chr11:102101200-102105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:102101200-102105800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:102101200-102107800	Weak transcription	HSMMtube	muscle
29	chr11:102101200-102108800	Weak transcription	Fetal Intestine Large	intestine
30	chr11:102101600-102107400	Weak transcription	Placenta	Placenta
31	chr11:102101600-102107600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:102101800-102106000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:102101800-102112800	Weak transcription	Liver	Liver
34	chr11:102102000-102105800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:102102000-102107400	Weak transcription	Adipose Nuclei	Adipose
36	chr11:102102000-102115400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:102102200-102107400	Weak transcription	HepG2	liver
38	chr11:102102200-102111600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:102103200-102105600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:102103200-102105600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr11:102103800-102107400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:102104200-102105600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:102104600-102106000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:102104600-102118600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:102104800-102106200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:102104800-102106800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:102105000-102106000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:102105000-102107200	Weak transcription	HMEC	breast
49	chr11:102105000-102118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:102105200-102105600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links