Variant report

Variant	rs17097551
Chromosome Location	chr11:102094930-102094931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:102094495-102094941	MCF10A-Er-Src	breast:	n/a	chr11:102094856-102094864
2	MYC	chr11:102094470-102095071	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:102094474-102095042	MCF10A-Er-Src	breast:	n/a	chr11:102094801-102094810
4	MYC	chr11:102094486-102095044	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr11:102094531-102094946	MCF10A-Er-Src	breast:	n/a	chr11:102094856-102094864
6	STAT3	chr11:102094484-102094971	MCF10A-Er-Src	breast:	n/a	chr11:102094856-102094864
7	STAT3	chr11:102094446-102094971	MCF10A-Er-Src	breast:	n/a	chr11:102094856-102094864
8	POLR2A	chr11:102094045-102095109	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:102094499-102094964	MCF10A-Er-Src	breast:	n/a	chr11:102094801-102094810
10	FOS	chr11:102094522-102094984	MCF10A-Er-Src	breast:	n/a	chr11:102094801-102094810
11	POLR2A	chr11:102094226-102095067	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr11:102094490-102094980	MCF10A-Er-Src	breast:	n/a	chr11:102094801-102094810

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102094443..102095187-chr5:71828731..71829602,2	MCF-7	breast:

Variant related genes	Relation type
YAP1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11225166	0.88[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs56876144	1.00[ASN][1000 genomes]
rs57630982	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58397810	1.00[AMR][1000 genomes]
rs59859727	1.00[ASN][1000 genomes]
rs60269946	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73582043	1.00[AMR][1000 genomes]
rs73582094	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73582098	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73582101	1.00[ASN][1000 genomes]
rs73583916	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73585832	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73585838	1.00[AMR][1000 genomes]
rs73585841	1.00[AMR][1000 genomes]
rs73585847	1.00[AMR][1000 genomes]
rs73585870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
2	chr11:102059600-102100400	Weak transcription	Gastric	stomach
3	chr11:102062800-102096400	Weak transcription	Small Intestine	intestine
4	chr11:102063800-102096600	Weak transcription	Stomach Mucosa	stomach
5	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:102074000-102097000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:102074000-102104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:102076200-102102200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:102077000-102097400	Weak transcription	Psoas Muscle	Psoas
11	chr11:102077600-102096600	Weak transcription	Esophagus	oesophagus
12	chr11:102077600-102096600	Weak transcription	Right Ventricle	heart
13	chr11:102078800-102096600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:102078800-102105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:102079000-102107200	Weak transcription	Fetal Brain Male	brain
16	chr11:102080800-102096400	Weak transcription	HSMMtube	muscle
17	chr11:102080800-102099600	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:102081000-102096600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:102081000-102100000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:102081200-102118600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:102081400-102096400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:102081400-102097800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:102085000-102096800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:102085600-102096200	Strong transcription	Hela-S3	cervix
25	chr11:102086800-102096400	Weak transcription	Fetal Stomach	stomach
26	chr11:102086800-102111600	Weak transcription	Lung	lung
27	chr11:102088600-102105200	Weak transcription	Brain Substantia Nigra	brain
28	chr11:102088800-102096600	Weak transcription	Left Ventricle	heart
29	chr11:102089200-102097800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:102090600-102098000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:102091800-102095800	Strong transcription	HSMM	muscle
32	chr11:102091800-102102800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:102092000-102095200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:102092000-102095800	Strong transcription	HepG2	liver
35	chr11:102092400-102095400	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr11:102093000-102095200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr11:102093000-102096600	Weak transcription	Aorta	Aorta
38	chr11:102093000-102096600	Strong transcription	Placenta	Placenta
39	chr11:102093000-102113000	Weak transcription	Ovary	ovary
40	chr11:102093200-102095200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:102093200-102095200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:102093200-102096600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:102093400-102096600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:102093400-102097600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:102094200-102095000	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:102094200-102095200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:102094200-102095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:102094200-102095200	Enhancers	Adipose Nuclei	Adipose
49	chr11:102094200-102095200	Enhancers	Fetal Intestine Small	intestine
50	chr11:102094200-102095400	Strong transcription	NH-A	brain

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