Variant report

Variant	rs73585870
Chromosome Location	chr11:102124177-102124178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17097551	1.00[ASN][1000 genomes]
rs56876144	1.00[ASN][1000 genomes]
rs57630982	0.90[ASN][1000 genomes]
rs59859727	1.00[ASN][1000 genomes]
rs60269946	1.00[ASN][1000 genomes]
rs7131529	0.95[ASN][1000 genomes]
rs73582094	0.90[ASN][1000 genomes]
rs73582098	0.90[ASN][1000 genomes]
rs73582101	1.00[ASN][1000 genomes]
rs73583916	1.00[ASN][1000 genomes]
rs73585832	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102113400-102124200	Weak transcription	Pancreas	Pancrea
2	chr11:102116000-102126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:102117200-102130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:102118800-102124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:102118800-102124200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:102122000-102124400	Enhancers	NHDF-Ad	bronchial
7	chr11:102122400-102124600	Weak transcription	Esophagus	oesophagus
8	chr11:102122600-102124200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:102122600-102124600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:102122800-102124600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:102122800-102124600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:102123000-102124400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:102123000-102124400	Enhancers	NHLF	lung
14	chr11:102123000-102124600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:102123000-102124800	Enhancers	Fetal Intestine Large	intestine
16	chr11:102123000-102124800	Enhancers	Fetal Lung	lung
17	chr11:102123200-102124600	Enhancers	HMEC	breast
18	chr11:102123200-102124800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:102123200-102124800	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:102123200-102124800	Enhancers	NHEK	skin
21	chr11:102123200-102125000	Enhancers	Fetal Intestine Small	intestine
22	chr11:102123400-102125200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:102123600-102124400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:102123800-102124200	Weak transcription	NH-A	brain
25	chr11:102123800-102124400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:102123800-102124400	Enhancers	Ovary	ovary
27	chr11:102123800-102124800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr11:102123800-102125000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:102123800-102126800	Weak transcription	Osteobl	bone
30	chr11:102123800-102127000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:102124000-102124200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:102124000-102124200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:102124000-102124400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:102124000-102124400	Flanking Active TSS	Hela-S3	cervix
35	chr11:102124000-102124600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:102124000-102124600	Enhancers	Placenta Amnion	Placenta Amnion

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