Variant report

Variant	rs59859727
Chromosome Location	chr11:102120521-102120522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17097551	1.00[ASN][1000 genomes]
rs56876144	1.00[ASN][1000 genomes]
rs57630982	0.90[ASN][1000 genomes]
rs60269946	1.00[ASN][1000 genomes]
rs7131529	0.95[ASN][1000 genomes]
rs73582094	0.90[ASN][1000 genomes]
rs73582098	0.90[ASN][1000 genomes]
rs73582101	1.00[ASN][1000 genomes]
rs73583916	1.00[ASN][1000 genomes]
rs73585832	1.00[ASN][1000 genomes]
rs73585870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102113400-102124200	Weak transcription	Pancreas	Pancrea
2	chr11:102116000-102126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:102116200-102122200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:102116200-102123000	Weak transcription	Osteobl	bone
5	chr11:102116200-102123200	Weak transcription	NHEK	skin
6	chr11:102116600-102122200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:102116800-102123200	Weak transcription	Hela-S3	cervix
8	chr11:102117200-102122000	Weak transcription	NHDF-Ad	bronchial
9	chr11:102117200-102130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:102118800-102123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:102118800-102123000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:102118800-102123000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:102118800-102123000	Weak transcription	Fetal Lung	lung
14	chr11:102118800-102123200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:102118800-102123200	Weak transcription	Fetal Intestine Small	intestine
16	chr11:102118800-102123800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:102118800-102124000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:102118800-102124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:102118800-102124200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:102119400-102122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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