Variant report

Variant	rs11225217
Chromosome Location	chr11:102208636-102208637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11225212	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225214	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225215	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225216	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11225228	1.00[YRI][hapmap]
rs11225246	1.00[YRI][hapmap]
rs11604189	1.00[YRI][hapmap]
rs12270723	1.00[YRI][hapmap]
rs12270893	1.00[YRI][hapmap]
rs12275349	1.00[YRI][hapmap]
rs12275676	1.00[ASN][1000 genomes]
rs12281328	1.00[YRI][hapmap]
rs12282509	1.00[YRI][hapmap]
rs12283923	1.00[YRI][hapmap]
rs12284238	1.00[AMR][1000 genomes]
rs12288713	1.00[AMR][1000 genomes]
rs12288787	1.00[AMR][1000 genomes]
rs12288938	1.00[YRI][hapmap]
rs12290870	1.00[YRI][hapmap]
rs12291114	1.00[YRI][hapmap]
rs12291210	1.00[YRI][hapmap]
rs12291368	1.00[ASN][1000 genomes]
rs12291456	1.00[YRI][hapmap]
rs12293834	1.00[YRI][hapmap]
rs12792649	1.00[YRI][hapmap]
rs13377312	1.00[YRI][hapmap]
rs17097648	0.83[YRI][hapmap]
rs17883781	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7112261	1.00[AMR][1000 genomes]
rs9971623	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3384244	chr11:102195350-102220898	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1839485	chr11:102207851-102220279	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102188800-102216600	Weak transcription	HSMMtube	muscle
2	chr11:102189400-102216600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:102189400-102216800	Weak transcription	Right Ventricle	heart
4	chr11:102191200-102216800	Weak transcription	Aorta	Aorta
5	chr11:102191200-102217400	Weak transcription	Esophagus	oesophagus
6	chr11:102191600-102216600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:102191800-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:102194600-102212600	Weak transcription	Dnd41	blood
9	chr11:102194800-102209800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:102195000-102210400	Weak transcription	HMEC	breast
11	chr11:102196000-102212200	Weak transcription	Hela-S3	cervix
12	chr11:102196200-102209200	Strong transcription	Liver	Liver
13	chr11:102196600-102209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:102197000-102209800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:102197800-102209400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:102198400-102209800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:102198400-102210600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr11:102198400-102217400	Weak transcription	Gastric	stomach
19	chr11:102200000-102210400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:102200000-102216600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:102201400-102209600	Strong transcription	GM12878-XiMat	blood
22	chr11:102201600-102216600	Weak transcription	Colonic Mucosa	Colon
23	chr11:102202000-102212400	Weak transcription	HSMM	muscle
24	chr11:102203200-102212200	Weak transcription	Stomach Mucosa	stomach
25	chr11:102203200-102216000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:102203600-102208800	Weak transcription	Lung	lung
27	chr11:102203600-102210400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:102203600-102210400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:102203600-102212200	Weak transcription	A549	lung
30	chr11:102203600-102212400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:102203600-102212600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:102203600-102214600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:102203600-102216600	Weak transcription	Adipose Nuclei	Adipose
34	chr11:102203600-102216600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:102203600-102217400	Weak transcription	Spleen	Spleen
36	chr11:102203800-102212200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:102203800-102212200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:102204000-102208800	Weak transcription	Fetal Intestine Small	intestine
39	chr11:102204400-102216600	Weak transcription	Small Intestine	intestine
40	chr11:102204400-102216800	Weak transcription	Pancreas	Pancrea
41	chr11:102204800-102212600	Weak transcription	Thymus	Thymus
42	chr11:102205000-102209600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:102205200-102209400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:102205400-102210000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:102205400-102210600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:102205600-102210000	Strong transcription	Fetal Thymus	thymus
47	chr11:102205800-102210400	Strong transcription	Primary B cells from cord blood	blood
48	chr11:102205800-102210600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:102206200-102209800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:102206400-102208800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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