Variant report

Variant	rs11225313
Chromosome Location	chr11:102418305-102418306
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11225220	1.00[AMR][1000 genomes]
rs11225318	1.00[AMR][1000 genomes]
rs12278300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278482	1.00[AMR][1000 genomes]
rs12282349	1.00[AMR][1000 genomes]
rs12294787	1.00[AMR][1000 genomes]
rs17098271	1.00[AMR][1000 genomes]
rs17099344	1.00[AMR][1000 genomes]
rs7952037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv826060	chr11:102414956-102425329	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv818861	chr11:102415859-102423890	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102414800-102419600	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:102415400-102418800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:102415400-102419000	Enhancers	Primary B cells from cord blood	blood
4	chr11:102415400-102420200	Enhancers	GM12878-XiMat	blood
5	chr11:102416400-102429400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:102416600-102418800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:102416600-102422000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:102416800-102434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:102417400-102420800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:102417400-102422800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:102417600-102418400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:102417600-102418600	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:102417800-102418400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr11:102417800-102418800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:102417800-102419000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:102417800-102423600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:102418200-102423000	Weak transcription	HSMM	muscle
18	chr11:102418200-102423000	Weak transcription	Osteobl	bone
19	chr11:102418200-102423800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links