Variant report

Variant	rs12278482
Chromosome Location	chr11:102447830-102447831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11225313	1.00[AMR][1000 genomes]
rs11225318	1.00[AMR][1000 genomes]
rs12278300	1.00[AMR][1000 genomes]
rs12282349	1.00[AMR][1000 genomes]
rs12294787	1.00[AMR][1000 genomes]
rs17098271	1.00[AMR][1000 genomes]
rs17099344	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102445000-102448000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:102445200-102448200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:102445200-102451000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:102446000-102448200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:102446000-102450600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:102446200-102448600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:102446400-102448000	Weak transcription	NHDF-Ad	bronchial
8	chr11:102446400-102448600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:102446400-102448800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:102446600-102448600	Enhancers	Primary T cells from cord blood	blood
11	chr11:102446600-102448600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:102446600-102448600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:102446600-102448600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:102446600-102448800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:102446600-102448800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:102446800-102448600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:102446800-102448600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr11:102446800-102448600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:102447000-102448200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:102447000-102448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:102447000-102448800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:102447200-102448000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:102447200-102448600	Enhancers	Primary B cells from cord blood	blood
24	chr11:102447200-102448800	Enhancers	Primary hematopoietic stem cells	blood
25	chr11:102447400-102448800	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:102447400-102449200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:102447400-102449200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:102447600-102453000	Weak transcription	HUVEC	blood vessel
29	chr11:102447800-102448600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:102447800-102448800	Enhancers	GM12878-XiMat	blood
31	chr11:102447800-102448800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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