Variant report

Variant	rs11226809
Chromosome Location	chr11:105496281-105496282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10750731	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[ASN][1000 genomes]
rs12099383	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1562221	0.82[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1822983	0.85[CEU][hapmap];0.95[ASN][1000 genomes]
rs3758799	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59835889	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60839987	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67083862	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68185149	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7110163	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7114503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991703	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72991706	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105484800-105500600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:105491000-105506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105495800-105496600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:105495800-105501800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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