Variant report

Variant	rs1562221
Chromosome Location	chr11:105483629-105483630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11226809	0.82[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12099383	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758799	0.85[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59835889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60839987	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66955071	1.00[ASN][1000 genomes]
rs67083862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68185149	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110163	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114503	0.88[EUR][1000 genomes]
rs7115187	0.82[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs72988133	0.80[ASN][1000 genomes]
rs72988181	1.00[ASN][1000 genomes]
rs72991703	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105479200-105484400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:105479400-105485800	Active TSS	Brain Angular Gyrus	brain
3	chr11:105479800-105484200	Active TSS	Brain Substantia Nigra	brain
4	chr11:105479800-105488600	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr11:105480400-105484000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr11:105480400-105484200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:105480600-105484000	Active TSS	Brain Anterior Caudate	brain
8	chr11:105480600-105485400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105480800-105485400	Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr11:105481400-105484400	Active TSS	Brain Hippocampus Middle	brain
11	chr11:105482000-105483800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:105482600-105484000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:105482800-105483800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:105482800-105484000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:105482800-105484600	Active TSS	Fetal Brain Female	brain
16	chr11:105482800-105486000	Active TSS	Fetal Intestine Large	intestine
17	chr11:105483200-105483800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr11:105483200-105483800	Active TSS	Fetal Intestine Small	intestine
19	chr11:105483200-105484000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:105483200-105484000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:105483200-105484000	Bivalent/Poised TSS	Fetal Brain Male	brain
22	chr11:105483200-105484000	Active TSS	Psoas Muscle	Psoas
23	chr11:105483200-105484200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:105483200-105484800	Active TSS	Brain Germinal Matrix	brain
25	chr11:105483400-105484000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:105483400-105484400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:105483600-105483800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:105483600-105483800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
29	chr11:105483600-105484000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr11:105483600-105484200	Active TSS	Brain Cingulate Gyrus	brain
31	chr11:105483600-105484200	Active TSS	NHDF-Ad	bronchial
32	chr11:105483600-105484400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr11:105483600-105484400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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