Variant report

Variant	rs72988181
Chromosome Location	chr11:105418960-105418961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12099383	1.00[ASN][1000 genomes]
rs1562221	1.00[ASN][1000 genomes]
rs3758799	1.00[ASN][1000 genomes]
rs59835889	1.00[ASN][1000 genomes]
rs60839987	1.00[ASN][1000 genomes]
rs66955071	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67083862	1.00[ASN][1000 genomes]
rs68185149	1.00[ASN][1000 genomes]
rs7110163	1.00[ASN][1000 genomes]
rs72988133	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72991703	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105416400-105419600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:105417600-105419600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:105417800-105419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:105418200-105419400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:105418200-105419600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:105418400-105419200	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:105418800-105419200	Enhancers	Fetal Brain Female	brain
8	chr11:105418800-105419800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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