Variant report
| Variant | rs72988133 |
|---|---|
| Chromosome Location | chr11:105402882-105402883 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr11:105402839-105403020 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254998 | TF binding region |
rSNPs within LD-proxies of this variant (count:48)
| rs_ID | r2[population] |
|---|---|
| rs12099383 | 0.80[ASN][1000 genomes] |
| rs1562221 | 0.80[ASN][1000 genomes] |
| rs17104217 | 0.81[ASN][1000 genomes] |
| rs17104241 | 0.81[ASN][1000 genomes] |
| rs1945959 | 0.94[ASN][1000 genomes] |
| rs28379652 | 0.81[ASN][1000 genomes] |
| rs34470220 | 0.94[ASN][1000 genomes] |
| rs35367676 | 0.81[ASN][1000 genomes] |
| rs3758799 | 0.80[ASN][1000 genomes] |
| rs59655467 | 0.94[ASN][1000 genomes] |
| rs59835889 | 0.80[ASN][1000 genomes] |
| rs60839987 | 0.80[ASN][1000 genomes] |
| rs6591127 | 0.81[ASN][1000 genomes] |
| rs6650183 | 0.81[ASN][1000 genomes] |
| rs66955071 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs67083862 | 0.80[ASN][1000 genomes] |
| rs68185149 | 0.80[ASN][1000 genomes] |
| rs7110163 | 0.80[ASN][1000 genomes] |
| rs72981808 | 0.81[ASN][1000 genomes] |
| rs72981833 | 0.81[ASN][1000 genomes] |
| rs72984105 | 0.81[ASN][1000 genomes] |
| rs72984108 | 0.81[ASN][1000 genomes] |
| rs72984116 | 0.81[ASN][1000 genomes] |
| rs72984140 | 0.81[ASN][1000 genomes] |
| rs72984142 | 0.81[ASN][1000 genomes] |
| rs72984149 | 0.81[ASN][1000 genomes] |
| rs72984153 | 0.81[ASN][1000 genomes] |
| rs72984171 | 0.81[ASN][1000 genomes] |
| rs72984175 | 0.81[ASN][1000 genomes] |
| rs72984177 | 0.81[ASN][1000 genomes] |
| rs72984181 | 0.81[ASN][1000 genomes] |
| rs72984192 | 0.94[ASN][1000 genomes] |
| rs72986112 | 0.94[ASN][1000 genomes] |
| rs72986117 | 0.94[ASN][1000 genomes] |
| rs72986123 | 0.94[ASN][1000 genomes] |
| rs72986125 | 0.94[ASN][1000 genomes] |
| rs72986138 | 0.94[ASN][1000 genomes] |
| rs72986140 | 0.88[ASN][1000 genomes] |
| rs72986176 | 0.94[ASN][1000 genomes] |
| rs72986177 | 0.94[ASN][1000 genomes] |
| rs72986179 | 0.94[ASN][1000 genomes] |
| rs72986181 | 0.94[ASN][1000 genomes] |
| rs72988181 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72991703 | 0.86[ASN][1000 genomes] |
| rs7943574 | 0.81[ASN][1000 genomes] |
| rs9666259 | 0.81[ASN][1000 genomes] |
| rs9667422 | 0.81[ASN][1000 genomes] |
| rs9919672 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949337 | chr11:104950007-105510193 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
