Variant report

Variant	rs72984171
Chromosome Location	chr11:105337666-105337667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105337141..105339701-chr11:105346066..105348102,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10502054	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17093789	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104149	0.91[EUR][1000 genomes]
rs17104173	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104177	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104209	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104214	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104217	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104241	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945959	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28379652	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34470220	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35367676	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830928	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57551124	0.91[EUR][1000 genomes]
rs59655467	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591127	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650183	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113333	0.91[EUR][1000 genomes]
rs7117444	0.91[EUR][1000 genomes]
rs7123951	0.91[EUR][1000 genomes]
rs7130335	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979813	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979825	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979826	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979881	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979886	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979894	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979895	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979896	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979899	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979902	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72981808	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981833	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984105	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984108	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984116	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984175	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984177	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984192	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986112	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986117	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986123	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986125	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986138	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986140	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72986176	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986177	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986179	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72986181	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72988133	0.81[ASN][1000 genomes]
rs7932382	0.91[EUR][1000 genomes]
rs7933555	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943574	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949848	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9666259	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919672	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105336800-105338400	Enhancers	HUVEC	blood vessel
2	chr11:105337000-105339600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr11:105337400-105337800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:105337400-105337800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:105337400-105338000	Enhancers	Hela-S3	cervix
6	chr11:105337400-105338200	Enhancers	NHEK	skin

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