Variant report

Variant	rs57551124
Chromosome Location	chr11:105228343-105228344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10502054	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10502057	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17093789	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104173	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104177	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104209	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104214	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104217	0.94[EUR][1000 genomes]
rs17104241	0.94[EUR][1000 genomes]
rs1945959	0.82[EUR][1000 genomes]
rs28379652	0.94[EUR][1000 genomes]
rs34470220	0.85[EUR][1000 genomes]
rs35367676	0.94[EUR][1000 genomes]
rs55830928	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59655467	0.82[EUR][1000 genomes]
rs6591127	0.94[EUR][1000 genomes]
rs6650183	0.94[EUR][1000 genomes]
rs7113333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7116904	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123951	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7130335	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979813	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979825	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979826	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979881	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979886	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979894	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979895	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979896	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979899	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72979902	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72981808	0.94[EUR][1000 genomes]
rs72981833	0.94[EUR][1000 genomes]
rs72984105	0.94[EUR][1000 genomes]
rs72984108	0.94[EUR][1000 genomes]
rs72984116	0.94[EUR][1000 genomes]
rs72984140	0.91[EUR][1000 genomes]
rs72984142	0.91[EUR][1000 genomes]
rs72984149	0.91[EUR][1000 genomes]
rs72984153	0.91[EUR][1000 genomes]
rs72984171	0.91[EUR][1000 genomes]
rs72984175	0.88[EUR][1000 genomes]
rs72984177	0.94[EUR][1000 genomes]
rs72984181	0.91[EUR][1000 genomes]
rs72984192	0.85[EUR][1000 genomes]
rs72986112	0.82[EUR][1000 genomes]
rs72986117	0.85[EUR][1000 genomes]
rs72986123	0.85[EUR][1000 genomes]
rs72986125	0.85[EUR][1000 genomes]
rs72986140	0.81[EUR][1000 genomes]
rs7932382	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933555	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943574	0.94[EUR][1000 genomes]
rs7949848	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9666259	0.94[EUR][1000 genomes]
rs9667422	0.94[EUR][1000 genomes]
rs9919672	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1042715	chr11:105158641-105237086	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv523995	chr11:105172049-105243371	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430427	chr11:105224246-105287241	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv33350	chr11:105225129-105249930	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105227600-105228600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:105227600-105228600	Enhancers	HMEC	breast
3	chr11:105228000-105228600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:105228200-105228600	Enhancers	NHEK	skin
5	chr11:105228200-105228800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:105228200-105229000	Enhancers	Fetal Heart	heart
7	chr11:105228200-105229000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links