Variant report

Variant	rs7116904
Chromosome Location	chr11:105173089-105173090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10502054	0.81[EUR][1000 genomes]
rs10502057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279445	1.00[ASN][1000 genomes]
rs12280181	1.00[ASN][1000 genomes]
rs12285400	1.00[ASN][1000 genomes]
rs12290155	1.00[ASN][1000 genomes]
rs12574455	1.00[ASN][1000 genomes]
rs1375423	1.00[ASN][1000 genomes]
rs17093789	0.81[EUR][1000 genomes]
rs17103994	1.00[ASN][1000 genomes]
rs17103995	1.00[ASN][1000 genomes]
rs17103997	1.00[ASN][1000 genomes]
rs17104003	1.00[ASN][1000 genomes]
rs17104149	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17104173	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17104177	0.82[EUR][1000 genomes]
rs17104209	0.81[EUR][1000 genomes]
rs17104214	0.81[EUR][1000 genomes]
rs17104217	0.81[EUR][1000 genomes]
rs17104241	0.81[EUR][1000 genomes]
rs28379652	0.81[EUR][1000 genomes]
rs35367676	0.81[EUR][1000 genomes]
rs57551124	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58127396	1.00[ASN][1000 genomes]
rs6591116	1.00[ASN][1000 genomes]
rs6591127	0.81[EUR][1000 genomes]
rs6650183	0.81[EUR][1000 genomes]
rs7111838	1.00[ASN][1000 genomes]
rs7112242	1.00[ASN][1000 genomes]
rs7113333	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117444	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7120924	1.00[ASN][1000 genomes]
rs7121960	1.00[ASN][1000 genomes]
rs7123951	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7130335	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72979813	0.84[EUR][1000 genomes]
rs72979825	0.81[EUR][1000 genomes]
rs72979826	0.81[EUR][1000 genomes]
rs72979881	0.81[EUR][1000 genomes]
rs72979886	0.81[EUR][1000 genomes]
rs72979894	0.81[EUR][1000 genomes]
rs72979895	0.81[EUR][1000 genomes]
rs72979896	0.81[EUR][1000 genomes]
rs72979899	0.81[EUR][1000 genomes]
rs72979902	0.81[EUR][1000 genomes]
rs72981808	0.81[EUR][1000 genomes]
rs72981833	0.81[EUR][1000 genomes]
rs72984105	0.81[EUR][1000 genomes]
rs72984108	0.81[EUR][1000 genomes]
rs72984116	0.81[EUR][1000 genomes]
rs72984177	0.81[EUR][1000 genomes]
rs73623420	1.00[ASN][1000 genomes]
rs7926220	1.00[ASN][1000 genomes]
rs7932382	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7933555	0.81[EUR][1000 genomes]
rs7933998	1.00[ASN][1000 genomes]
rs7943574	0.81[EUR][1000 genomes]
rs7949848	0.81[EUR][1000 genomes]
rs9666259	0.81[EUR][1000 genomes]
rs9667422	0.81[EUR][1000 genomes]
rs9919672	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1042715	chr11:105158641-105237086	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv523995	chr11:105172049-105243371	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105172400-105173200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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