Variant report

Variant	rs7121960
Chromosome Location	chr11:105073669-105073670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105039682..105042328-chr11:105072015..105073951,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10502057	1.00[ASN][1000 genomes]
rs12279445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285400	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290155	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574455	1.00[ASN][1000 genomes]
rs1375423	1.00[ASN][1000 genomes]
rs17103994	1.00[ASN][1000 genomes]
rs17103995	1.00[ASN][1000 genomes]
rs17103997	1.00[ASN][1000 genomes]
rs17104003	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58127396	1.00[ASN][1000 genomes]
rs6591116	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112242	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116904	1.00[ASN][1000 genomes]
rs7120924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73623420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926220	1.00[ASN][1000 genomes]
rs7933998	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950868	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv556220	chr11:105042650-105112018	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105070400-105073800	Enhancers	Fetal Intestine Large	intestine
2	chr11:105070800-105073800	Enhancers	Fetal Intestine Small	intestine
3	chr11:105070800-105074000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:105072800-105073800	Flanking Active TSS	Dnd41	blood
5	chr11:105072800-105075000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:105073000-105074600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:105073000-105074800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:105073000-105074800	Enhancers	Stomach Mucosa	stomach
9	chr11:105073000-105075000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:105073200-105073800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:105073200-105073800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:105073200-105073800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:105073200-105073800	Enhancers	Gastric	stomach
14	chr11:105073200-105073800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:105073200-105074000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:105073200-105074800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr11:105073200-105075000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr11:105073400-105073800	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:105073400-105074000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:105073400-105074200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr11:105073400-105074800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:105073600-105073800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:105073600-105074000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:105073600-105075000	Enhancers	HepG2	liver
25	chr11:105073600-105076400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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