Variant report

Variant	rs7117444
Chromosome Location	chr11:105198314-105198315
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10502054	0.94[EUR][1000 genomes]
rs10502057	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17093789	0.94[EUR][1000 genomes]
rs17104149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104173	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17104177	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17104209	0.94[EUR][1000 genomes]
rs17104214	0.94[EUR][1000 genomes]
rs17104217	0.94[EUR][1000 genomes]
rs17104241	0.94[EUR][1000 genomes]
rs1945959	0.82[EUR][1000 genomes]
rs28379652	0.94[EUR][1000 genomes]
rs34470220	0.85[EUR][1000 genomes]
rs35367676	0.94[EUR][1000 genomes]
rs55830928	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs57551124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59655467	0.82[EUR][1000 genomes]
rs6591127	0.94[EUR][1000 genomes]
rs6650183	0.94[EUR][1000 genomes]
rs7113333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116904	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7123951	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130335	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72979813	0.97[EUR][1000 genomes]
rs72979825	0.94[EUR][1000 genomes]
rs72979826	0.94[EUR][1000 genomes]
rs72979881	0.94[EUR][1000 genomes]
rs72979886	0.94[EUR][1000 genomes]
rs72979894	0.94[EUR][1000 genomes]
rs72979895	0.94[EUR][1000 genomes]
rs72979896	0.94[EUR][1000 genomes]
rs72979899	0.94[EUR][1000 genomes]
rs72979902	0.94[EUR][1000 genomes]
rs72981808	0.94[EUR][1000 genomes]
rs72981833	0.94[EUR][1000 genomes]
rs72984105	0.94[EUR][1000 genomes]
rs72984108	0.94[EUR][1000 genomes]
rs72984116	0.94[EUR][1000 genomes]
rs72984140	0.91[EUR][1000 genomes]
rs72984142	0.91[EUR][1000 genomes]
rs72984149	0.91[EUR][1000 genomes]
rs72984153	0.91[EUR][1000 genomes]
rs72984171	0.91[EUR][1000 genomes]
rs72984175	0.88[EUR][1000 genomes]
rs72984177	0.94[EUR][1000 genomes]
rs72984181	0.91[EUR][1000 genomes]
rs72984192	0.85[EUR][1000 genomes]
rs72986112	0.82[EUR][1000 genomes]
rs72986117	0.85[EUR][1000 genomes]
rs72986123	0.85[EUR][1000 genomes]
rs72986125	0.85[EUR][1000 genomes]
rs72986140	0.81[EUR][1000 genomes]
rs7932382	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7933555	0.94[EUR][1000 genomes]
rs7943574	0.94[EUR][1000 genomes]
rs7949848	0.94[EUR][1000 genomes]
rs9666259	0.94[EUR][1000 genomes]
rs9667422	0.94[EUR][1000 genomes]
rs9919672	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1042715	chr11:105158641-105237086	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv523995	chr11:105172049-105243371	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105196600-105198800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:105197200-105200000	Enhancers	Fetal Intestine Small	intestine
3	chr11:105197600-105200200	Enhancers	Fetal Intestine Large	intestine

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