Variant report

Variant	rs11226867
Chromosome Location	chr11:105734327-105734328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56091908	0.87[AFR][1000 genomes]
rs57375419	0.87[AFR][1000 genomes]
rs649098	0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105728600-105734400	Weak transcription	Brain Germinal Matrix	brain
3	chr11:105728800-105738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:105730000-105739400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:105730400-105738600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:105733400-105734600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:105733400-105734600	Enhancers	Brain Substantia Nigra	brain
8	chr11:105733600-105734800	Enhancers	Dnd41	blood
9	chr11:105733800-105734600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:105733800-105734600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:105733800-105734600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:105733800-105734600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:105734000-105735000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:105734000-105736400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:105734000-105737600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:105734200-105734400	Enhancers	Brain Anterior Caudate	brain
17	chr11:105734200-105734600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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