Variant report

Variant	rs57375419
Chromosome Location	chr11:105733168-105733169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10791776	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10895881	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11226867	0.87[AFR][1000 genomes]
rs11226868	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11226871	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11226875	0.84[EUR][1000 genomes]
rs11827884	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1939152	0.90[EUR][1000 genomes]
rs3758796	0.82[ASN][1000 genomes]
rs545184	0.83[ASN][1000 genomes]
rs56073265	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56091908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56221005	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs642544	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105725200-105733400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105728600-105734000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105728600-105734400	Weak transcription	Brain Germinal Matrix	brain
5	chr11:105728800-105738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105730000-105739400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:105730400-105738600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:105731000-105733400	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links