Variant report

Variant	rs56221005
Chromosome Location	chr11:105763031-105763032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10895883	0.86[ASN][1000 genomes]
rs11226871	0.82[ASN][1000 genomes]
rs11226875	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11827884	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939152	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155022	0.95[ASN][1000 genomes]
rs56091908	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57375419	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs666107	0.82[ASN][1000 genomes]
rs667174	0.82[ASN][1000 genomes]
rs72976048	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105760800-105763400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:105760800-105764000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:105760800-105764400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:105761200-105763600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:105762400-105763400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:105762400-105763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:105762600-105767400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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