Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1043142	0.88[CEU][hapmap]
rs10791776	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10895881	0.91[ASN][1000 genomes]
rs11226868	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11226871	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11226875	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs17104835	0.83[CEU][hapmap]
rs1892877	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1939152	0.88[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs1939826	0.83[CEU][hapmap]
rs3758796	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs545184	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs56073265	0.89[ASN][1000 genomes]
rs56091908	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56221005	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57375419	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs642544	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs657530	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs680109	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs7943336	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11827884	KIAA1826	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105725200-105733400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105728600-105730200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:105728600-105734000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105728600-105734400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:105728800-105738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105729000-105729400	Weak transcription	Brain Angular Gyrus	brain

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