Variant report

Variant	rs7943336
Chromosome Location	chr11:105832020-105832021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1043142	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs10895885	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10895888	0.96[ASN][1000 genomes]
rs10895889	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10895890	0.86[ASN][1000 genomes]
rs10895891	0.82[ASN][1000 genomes]
rs11226875	0.89[CEU][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11226880	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11226881	0.95[ASN][1000 genomes]
rs11226883	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11226886	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11226887	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226890	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11226891	0.86[ASN][1000 genomes]
rs11226892	0.87[ASN][1000 genomes]
rs11821382	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11827884	0.83[CEU][hapmap]
rs17104835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939152	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1939826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155337	0.84[ASN][1000 genomes]
rs2186589	0.93[ASN][1000 genomes]
rs3758792	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3758793	0.96[ASN][1000 genomes]
rs3824911	0.88[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs471795	0.83[JPT][hapmap]
rs583452	0.82[ASN][1000 genomes]
rs609665	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7110414	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72976048	0.82[ASN][1000 genomes]
rs72979245	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979260	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936460	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105829800-105832200	Weak transcription	Right Atrium	heart
3	chr11:105831600-105836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:105831600-105838600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105831800-105836200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:105831800-105836400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:105832000-105836400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links