Variant report

Variant	rs3758792
Chromosome Location	chr11:105849867-105849868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1043142	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10791776	0.80[EUR][1000 genomes]
rs10895881	0.80[EUR][1000 genomes]
rs10895883	0.84[ASN][1000 genomes]
rs10895885	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895888	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895889	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895890	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226868	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs11226871	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs11226875	0.94[JPT][hapmap]
rs11226880	0.95[CEU][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226881	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226886	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226887	0.89[ASN][1000 genomes]
rs11226890	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226891	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226892	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147065	0.88[AFR][1000 genomes]
rs11821382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262357	0.84[AFR][1000 genomes]
rs1267444	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs17104835	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1939152	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1939800	0.92[YRI][hapmap]
rs1939826	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2155022	0.81[EUR][1000 genomes]
rs2155337	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155338	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs2186589	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758790	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs3758793	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs471396	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs471795	0.83[JPT][hapmap]
rs505829	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs507450	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs511106	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs513947	0.86[AFR][1000 genomes]
rs534844	0.84[AFR][1000 genomes]
rs541640	0.86[YRI][hapmap]
rs556968	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs56073265	0.80[EUR][1000 genomes]
rs561643	0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs562546	0.87[AFR][1000 genomes]
rs583452	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs589574	0.88[AFR][1000 genomes]
rs592656	0.88[AFR][1000 genomes]
rs593130	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs604545	0.81[AFR][1000 genomes]
rs609235	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs609665	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs619323	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs640988	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs641574	0.85[YRI][hapmap]
rs654035	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs656292	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs659840	0.88[AFR][1000 genomes]
rs660278	0.88[AFR][1000 genomes]
rs665554	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs677315	0.82[AFR][1000 genomes]
rs684470	0.88[AFR][1000 genomes]
rs7110414	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116046	0.84[AFR][1000 genomes]
rs72979245	0.96[ASN][1000 genomes]
rs72979260	0.94[ASN][1000 genomes]
rs7936460	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943336	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105846000-105850200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
6	chr11:105849800-105850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain

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