Variant report

Variant	rs17104835
Chromosome Location	chr11:105842083-105842084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105840068..105843090-chr11:105843881..105846613,3	K562	blood:

Variant related genes	Relation type
ENSG00000252081	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1043142	0.94[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs10895885	0.93[ASN][1000 genomes]
rs10895888	0.96[ASN][1000 genomes]
rs10895889	0.87[ASN][1000 genomes]
rs10895890	0.86[ASN][1000 genomes]
rs10895891	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11226875	0.88[CEU][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11226880	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11226881	0.95[ASN][1000 genomes]
rs11226883	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11226886	0.89[ASN][1000 genomes]
rs11226887	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226890	0.89[ASN][1000 genomes]
rs11226891	0.86[ASN][1000 genomes]
rs11226892	0.87[ASN][1000 genomes]
rs11821382	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[ASN][1000 genomes]
rs11827884	0.83[CEU][hapmap]
rs1939152	1.00[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1939826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155337	0.84[ASN][1000 genomes]
rs2186589	0.93[ASN][1000 genomes]
rs3758792	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3758793	0.96[ASN][1000 genomes]
rs3824911	0.81[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs471795	0.82[JPT][hapmap]
rs583452	0.82[ASN][1000 genomes]
rs609665	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7110414	0.89[ASN][1000 genomes]
rs72976048	0.82[ASN][1000 genomes]
rs72979245	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979260	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936460	0.87[ASN][1000 genomes]
rs7943336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17104835	KIAA1826	cis	cerebellum	SCAN
rs17104835	GUCY1A2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105838800-105842800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105839200-105843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:105839400-105845000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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