Variant report

Variant	rs11226886
Chromosome Location	chr11:105864447-105864448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1043142	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10791776	0.82[EUR][1000 genomes]
rs10895881	0.82[EUR][1000 genomes]
rs10895883	0.82[EUR][1000 genomes]
rs10895885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895888	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895889	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895890	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895891	0.86[ASN][1000 genomes]
rs11226868	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11226871	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs11226875	0.94[JPT][hapmap]
rs11226880	0.95[CEU][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11226881	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226883	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226887	0.96[ASN][1000 genomes]
rs11226890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226891	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226892	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821382	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104835	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1939152	0.94[JPT][hapmap]
rs1939826	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2155022	0.83[EUR][1000 genomes]
rs2155337	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2186589	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2847178	0.83[ASN][1000 genomes]
rs3758790	0.81[YRI][hapmap]
rs3758792	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs3758793	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs471795	0.83[JPT][hapmap]
rs56073265	0.82[EUR][1000 genomes]
rs583452	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs609665	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7110414	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979245	0.89[ASN][1000 genomes]
rs72979260	0.91[ASN][1000 genomes]
rs7936460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943336	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105854600-105865000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:105857800-105866600	Weak transcription	Fetal Lung	lung
6	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:105860200-105866400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:105860600-105866600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:105860800-105864600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:105861200-105866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:105861200-105879200	Weak transcription	HMEC	breast
14	chr11:105861400-105866600	Weak transcription	Esophagus	oesophagus
15	chr11:105861600-105866600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:105861800-105866600	Weak transcription	Lung	lung
17	chr11:105862000-105866600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:105862600-105866400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:105862800-105865800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:105862800-105866400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:105862800-105866600	Weak transcription	Gastric	stomach
22	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
23	chr11:105863000-105876600	Weak transcription	Fetal Kidney	kidney
24	chr11:105863000-105880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:105863200-105864800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:105863200-105864800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:105863200-105866600	Weak transcription	Ovary	ovary
28	chr11:105863400-105864800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:105863400-105865400	Weak transcription	Liver	Liver
30	chr11:105863400-105866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:105863400-105866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:105863400-105866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:105863400-105866600	Weak transcription	NHDF-Ad	bronchial
34	chr11:105863600-105866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:105863600-105866600	Weak transcription	Fetal Thymus	thymus
36	chr11:105863600-105866600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:105863800-105864800	ZNF genes & repeats	Fetal Brain Female	brain
38	chr11:105863800-105865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:105863800-105866400	Weak transcription	Adipose Nuclei	Adipose
40	chr11:105864000-105865000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
41	chr11:105864000-105865000	ZNF genes & repeats	Brain Germinal Matrix	brain
42	chr11:105864000-105865000	Strong transcription	Left Ventricle	heart
43	chr11:105864000-105865200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr11:105864000-105865600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:105864000-105866600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:105864000-105866600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:105864000-105866600	Weak transcription	Fetal Intestine Large	intestine
48	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
49	chr11:105864200-105864600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
50	chr11:105864200-105865200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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