Variant report

Variant	rs11821382
Chromosome Location	chr11:105847468-105847469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1043142	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs10791776	0.80[EUR][1000 genomes]
rs10895881	0.80[EUR][1000 genomes]
rs10895883	0.84[ASN][1000 genomes]
rs10895885	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895888	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895889	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895890	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226868	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs11226871	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs11226875	0.94[JPT][hapmap]
rs11226880	0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226881	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226886	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226887	0.89[ASN][1000 genomes]
rs11226890	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226891	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226892	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147065	0.84[AFR][1000 genomes]
rs1262357	0.81[AFR][1000 genomes]
rs1267444	0.85[LWK][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs17104835	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[ASN][1000 genomes]
rs1939152	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1939800	0.82[LWK][hapmap];0.85[YRI][hapmap]
rs1939826	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2155022	0.81[EUR][1000 genomes]
rs2155337	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155338	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2186589	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758790	0.85[ASW][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs3758792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs3758793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs471396	0.81[AFR][1000 genomes]
rs471795	0.82[JPT][hapmap]
rs505829	0.85[LWK][hapmap];0.86[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs507450	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs511106	0.81[AFR][1000 genomes]
rs513947	0.83[AFR][1000 genomes]
rs534844	0.81[AFR][1000 genomes]
rs541640	0.81[YRI][hapmap]
rs556968	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs56073265	0.80[EUR][1000 genomes]
rs561643	0.81[AFR][1000 genomes]
rs562546	0.84[AFR][1000 genomes]
rs582479	0.81[YRI][hapmap]
rs583452	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs589574	0.84[AFR][1000 genomes]
rs592656	0.84[AFR][1000 genomes]
rs593130	0.85[LWK][hapmap];0.86[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs609235	0.87[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs609665	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs619323	0.81[LWK][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs640988	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs641574	0.82[LWK][hapmap]
rs654035	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs656292	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs659840	0.84[AFR][1000 genomes]
rs660278	0.84[AFR][1000 genomes]
rs665554	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs684470	0.84[AFR][1000 genomes]
rs7110414	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72979245	0.96[ASN][1000 genomes]
rs72979260	0.94[ASN][1000 genomes]
rs7936460	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943336	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11821382	SSR2	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105846000-105850200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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