Variant report

Variant	rs11226871
Chromosome Location	chr11:105750082-105750083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10791776	0.83[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895881	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895883	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895885	0.86[EUR][1000 genomes]
rs10895888	0.80[EUR][1000 genomes]
rs10895889	0.82[EUR][1000 genomes]
rs10895890	0.82[EUR][1000 genomes]
rs11226868	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226880	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226881	0.82[EUR][1000 genomes]
rs11226883	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226886	0.82[EUR][1000 genomes]
rs11226890	0.82[EUR][1000 genomes]
rs11226891	0.82[EUR][1000 genomes]
rs11226892	0.82[EUR][1000 genomes]
rs11821382	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs11827884	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1258578	0.85[ASN][1000 genomes]
rs1892877	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2155022	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2155337	0.82[EUR][1000 genomes]
rs2186589	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3758792	0.95[CEU][hapmap]
rs3758793	0.80[EUR][1000 genomes]
rs3758796	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3824911	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs545184	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs56073265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56091908	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56221005	0.82[ASN][1000 genomes]
rs57375419	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs583452	0.84[EUR][1000 genomes]
rs597542	0.85[ASN][1000 genomes]
rs642544	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs657530	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs680109	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs683505	0.85[ASN][1000 genomes]
rs7110414	0.82[EUR][1000 genomes]
rs7936460	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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