Variant report

Variant	rs7936460
Chromosome Location	chr11:105867585-105867586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10791776	0.82[EUR][1000 genomes]
rs10895881	0.82[EUR][1000 genomes]
rs10895883	0.82[EUR][1000 genomes]
rs10895885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10895888	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895889	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895890	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895891	0.84[ASN][1000 genomes]
rs11226868	0.82[EUR][1000 genomes]
rs11226871	0.82[EUR][1000 genomes]
rs11226880	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11226881	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11226883	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226887	0.94[ASN][1000 genomes]
rs11226890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226891	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226892	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821382	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104835	0.87[ASN][1000 genomes]
rs1939826	0.87[ASN][1000 genomes]
rs2155022	0.83[EUR][1000 genomes]
rs2155337	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2186589	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2847178	0.81[ASN][1000 genomes]
rs3758793	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824911	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56073265	0.82[EUR][1000 genomes]
rs583452	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7110414	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979245	0.87[ASN][1000 genomes]
rs72979260	0.89[ASN][1000 genomes]
rs7943336	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
2	chr11:105860000-105876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:105860000-105876400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:105860400-105874200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:105861200-105879200	Weak transcription	HMEC	breast
6	chr11:105862800-105883400	Weak transcription	Psoas Muscle	Psoas
7	chr11:105863000-105876600	Weak transcription	Fetal Kidney	kidney
8	chr11:105863000-105880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
10	chr11:105864600-105876600	Weak transcription	HSMMtube	muscle
11	chr11:105864800-105867600	Strong transcription	Fetal Brain Female	brain
12	chr11:105865000-105867800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:105865000-105867800	Strong transcription	Fetal Muscle Leg	muscle
14	chr11:105865000-105868800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:105865000-105876600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:105865000-105890400	Weak transcription	A549	lung
17	chr11:105865200-105867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:105865200-105869800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:105865200-105873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:105865200-105874600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:105865200-105876800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
23	chr11:105865400-105867600	Strong transcription	Liver	Liver
24	chr11:105865400-105867600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:105865400-105874200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:105865400-105874200	Weak transcription	Placenta	Placenta
27	chr11:105865400-105874400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:105865400-105876600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:105865400-105876600	Weak transcription	Small Intestine	intestine
30	chr11:105865400-105880200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:105865600-105868800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:105865600-105874200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:105865600-105875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:105865800-105867800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:105865800-105868000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:105865800-105879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:105866000-105879800	Weak transcription	HUVEC	blood vessel
38	chr11:105866200-105867600	Strong transcription	GM12878-XiMat	blood
39	chr11:105866200-105876400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:105866400-105867600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:105866400-105867600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:105866400-105867600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:105866400-105867600	Strong transcription	Primary B cells from cord blood	blood
44	chr11:105866400-105867600	Strong transcription	Adipose Nuclei	Adipose
45	chr11:105866400-105867800	Strong transcription	Primary T cells from cord blood	blood
46	chr11:105866400-105867800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr11:105866400-105867800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:105866400-105867800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:105866400-105867800	Strong transcription	Thymus	Thymus
50	chr11:105866400-105869400	Weak transcription	Right Atrium	heart

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