Variant report

Variant	rs11226883
Chromosome Location	chr11:105841327-105841328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105839218..105841447-chr11:105947360..105950222,2	K562	blood:
2	chr11:105840068..105843090-chr11:105843881..105846613,3	K562	blood:

Variant related genes	Relation type
ENSG00000149313	Chromatin interaction
ENSG00000182359	Chromatin interaction
ENSG00000252081	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1043142	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10791776	0.83[EUR][1000 genomes]
rs10895881	0.83[EUR][1000 genomes]
rs10895883	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895885	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895888	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895889	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895890	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226868	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226871	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226875	0.94[JPT][hapmap]
rs11226880	0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226881	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226886	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226887	0.89[ASN][1000 genomes]
rs11226890	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226891	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226892	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11821382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1267444	0.81[YRI][hapmap]
rs17104835	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1939152	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1939800	0.85[YRI][hapmap]
rs1939826	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2155022	0.83[EUR][1000 genomes]
rs2155337	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2186589	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758790	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs3758792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs3758793	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs471795	0.83[JPT][hapmap]
rs505829	0.81[YRI][hapmap]
rs56073265	0.83[EUR][1000 genomes]
rs583452	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs593130	0.81[YRI][hapmap]
rs609235	0.81[YRI][hapmap]
rs609665	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs619323	0.81[YRI][hapmap]
rs656292	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs7110414	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116046	0.82[AFR][1000 genomes]
rs72979245	0.96[ASN][1000 genomes]
rs72979260	0.94[ASN][1000 genomes]
rs7936460	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943336	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105838800-105842800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105839200-105843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:105839400-105845000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links