Variant report

Variant	rs10895888
Chromosome Location	chr11:105846123-105846124
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:105845872-105846295	MCF10A-Er-Src	breast:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073
2	GATA3	chr11:105845742-105846302	SK-N-SH	brain:	n/a	chr11:105846043-105846064
3	CEBPB	chr11:105845916-105846294	IMR90	lung:	n/a	n/a
4	FOS	chr11:105845854-105846390	HUVEC	blood vessel:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073
5	POLR2A	chr11:105845955-105846328	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr11:105845945-105846221	MCF10A-Er-Src	breast:	n/a	chr11:105846064-105846073
7	FOS	chr11:105845928-105846259	MCF10A-Er-Src	breast:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073
8	GATA2	chr11:105845847-105846228	HUVEC	blood vessel:	n/a	chr11:105846043-105846064
9	FOS	chr11:105845880-105846290	MCF10A-Er-Src	breast:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073
10	MAFK	chr11:105845838-105846135	HepG2	liver:	n/a	chr11:105846010-105846021 chr11:105846009-105846023 chr11:105846006-105846022 chr11:105846011-105846022 chr11:105846011-105846022
11	STAT3	chr11:105845952-105846163	MCF10A-Er-Src	breast:	n/a	chr11:105846064-105846073
12	GATA3	chr11:105845735-105846424	SK-N-SH	brain:	n/a	chr11:105846366-105846375 chr11:105846043-105846064
13	MAFK	chr11:105845783-105846159	IMR90	lung:	n/a	chr11:105846010-105846021 chr11:105846009-105846023 chr11:105846006-105846022 chr11:105846011-105846022 chr11:105846011-105846022
14	STAT3	chr11:105845945-105846162	MCF10A-Er-Src	breast:	n/a	chr11:105846064-105846073
15	FOS	chr11:105845905-105846275	MCF10A-Er-Src	breast:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073

Variant related genes	Relation type
RNU6-277P	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10791776	0.80[EUR][1000 genomes]
rs10895881	0.80[EUR][1000 genomes]
rs10895883	0.84[ASN][1000 genomes]
rs10895885	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895889	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895890	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226868	0.80[EUR][1000 genomes]
rs11226871	0.80[EUR][1000 genomes]
rs11226880	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226881	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226883	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226886	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226887	0.89[ASN][1000 genomes]
rs11226890	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226891	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11226892	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147065	0.84[AFR][1000 genomes]
rs11821382	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104835	0.96[ASN][1000 genomes]
rs1939152	0.83[ASN][1000 genomes]
rs1939826	0.96[ASN][1000 genomes]
rs2155022	0.81[EUR][1000 genomes]
rs2155337	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155338	0.82[AFR][1000 genomes]
rs2186589	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758790	0.90[AFR][1000 genomes]
rs3758793	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824911	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs505829	0.84[AFR][1000 genomes]
rs513947	0.82[AFR][1000 genomes]
rs56073265	0.80[EUR][1000 genomes]
rs562546	0.85[AFR][1000 genomes]
rs583452	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs589574	0.84[AFR][1000 genomes]
rs592656	0.84[AFR][1000 genomes]
rs593130	0.84[AFR][1000 genomes]
rs609235	0.83[AFR][1000 genomes]
rs609665	0.88[ASN][1000 genomes]
rs640988	0.84[AFR][1000 genomes]
rs654035	0.84[AFR][1000 genomes]
rs656292	0.82[AFR][1000 genomes]
rs659840	0.84[AFR][1000 genomes]
rs660278	0.84[AFR][1000 genomes]
rs684470	0.84[AFR][1000 genomes]
rs7110414	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72979245	0.96[ASN][1000 genomes]
rs72979260	0.94[ASN][1000 genomes]
rs7936460	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943336	0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105845800-105846400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:105845800-105846400	Enhancers	Hela-S3	cervix
6	chr11:105845800-105846400	Enhancers	HUVEC	blood vessel
7	chr11:105846000-105850200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links