Variant report

Variant	rs11226880
Chromosome Location	chr11:105834837-105834838
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105833426..105835419-chr11:105892576..105894340,2	K562	blood:

Variant related genes	Relation type
ENSG00000170903	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1043142	0.94[JPT][hapmap]
rs10791776	0.83[EUR][1000 genomes]
rs10895881	0.83[EUR][1000 genomes]
rs10895883	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10895885	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895888	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10895889	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895890	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11226868	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226871	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11226875	0.88[JPT][hapmap]
rs11226881	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226883	0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226886	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11226887	0.84[ASN][1000 genomes]
rs11226890	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11226891	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11226892	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11821382	0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1262357	0.80[AFR][1000 genomes]
rs1267444	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs17104770	0.81[AFR][1000 genomes]
rs17104835	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1939152	0.88[JPT][hapmap]
rs1939800	0.84[YRI][hapmap]
rs1939826	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2155022	0.83[EUR][1000 genomes]
rs2155337	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2186589	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758790	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs3758792	0.95[CEU][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs3758793	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824911	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs471396	0.80[AFR][1000 genomes]
rs471795	0.88[JPT][hapmap]
rs505829	0.81[YRI][hapmap]
rs507450	0.80[AFR][1000 genomes]
rs511106	0.80[AFR][1000 genomes]
rs534844	0.80[AFR][1000 genomes]
rs556968	0.80[AFR][1000 genomes]
rs56073265	0.83[EUR][1000 genomes]
rs561643	0.80[AFR][1000 genomes]
rs583452	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs593130	0.81[YRI][hapmap]
rs609235	0.81[YRI][hapmap]
rs609665	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs619323	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs656292	0.85[YRI][hapmap]
rs665554	0.80[AFR][1000 genomes]
rs669793	0.88[JPT][hapmap]
rs7110414	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116046	0.88[AFR][1000 genomes]
rs72979245	0.91[ASN][1000 genomes]
rs72979260	0.89[ASN][1000 genomes]
rs7936460	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7943336	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105831600-105836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:105831600-105838600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105831800-105836200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:105831800-105836400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:105832000-105836400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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