Variant report

Variant	rs669793
Chromosome Location	chr11:105846341-105846342
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:105845854-105846390	HUVEC	blood vessel:	n/a	chr11:105846062-105846074 chr11:105846062-105846073 chr11:105846063-105846072 chr11:105846063-105846073 chr11:105846065-105846072 chr11:105846063-105846073
2	GATA3	chr11:105845735-105846424	SK-N-SH	brain:	n/a	chr11:105846366-105846375 chr11:105846043-105846064

Variant related genes	Relation type
RNU6-277P	TF binding region

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1043144	0.80[JPT][hapmap];0.86[YRI][hapmap]
rs11226880	0.88[JPT][hapmap]
rs11226908	0.82[JPT][hapmap]
rs1144410	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs1147065	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1262357	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1267444	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17104770	0.84[ASN][1000 genomes]
rs1939153	0.89[JPT][hapmap];0.82[YRI][hapmap]
rs1939800	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2000633	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2096785	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155338	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2256121	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509484	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2564909	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2564910	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2846214	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2846215	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2846219	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2847187	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758790	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs471396	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs471795	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs505829	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs507450	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs509512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511106	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs513947	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs534844	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs539238	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs541640	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs548814	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556968	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs561643	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs562546	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs567161	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571533	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582479	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs587978	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs588638	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589104	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs589574	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs592656	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs593130	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs601480	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604545	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs609235	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs609665	0.84[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs619323	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs622178	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs622367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs631002	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs638777	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640988	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs641574	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs645905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654035	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs656292	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6591144	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs659840	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs660278	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs665554	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs669397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs675001	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675084	0.84[ASN][1000 genomes]
rs677315	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs681156	0.85[CEU][hapmap];0.89[JPT][hapmap];0.97[YRI][hapmap];0.81[ASN][1000 genomes]
rs684470	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs685725	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs694514	0.89[CEU][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116046	0.86[ASN][1000 genomes]
rs948297	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105845800-105846400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:105845800-105846400	Enhancers	Hela-S3	cervix
6	chr11:105845800-105846400	Enhancers	HUVEC	blood vessel
7	chr11:105846000-105850200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links